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Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
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Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

Quick, Joshua ; Grubaugh, Nathan D ; Pullan, Steven T ; Claro, Ingra M ; Smith, Andrew D ; Gangavarapu, Karthik ; Oliveira, Glenn ; Robles-Sikisaka, Refugio ; Rogers, Thomas F ; Beutler, Nathan A ; Burton, Dennis R ; Lewis-Ximenez, Lia Laura ; de Jesus, Jaqueline Goes ; Giovanetti, Marta ; Hill, Sarah C ; Black, Allison ; Bedford, Trevor ; Carroll, Miles W ; Nunes, Marcio ; Alcantara, Jr, Luiz Carlos ; Sabino, Ester C ; Baylis, Sally A ; Faria, Nuno R ; Loose, Matthew ; Simpson, Jared T ; Pybus, Oliver G ; Andersen, Kristian G ; Loman, Nicholas J

Nature protocols, 2017-06, Vol.12 (6), p.1261-1276 [Periódico revisado por pares]

England: Nature Publishing Group

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2
Resurgence of COVID-19 in Manaus, Brazil, despite high seroprevalence
Resurgence of COVID-19 in Manaus, Brazil, despite high seroprevalence
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Resurgence of COVID-19 in Manaus, Brazil, despite high seroprevalence

Sabino, Ester C ; Buss, Lewis F ; Carvalho, Maria P S ; Prete, Carlos A ; Crispim, Myuki A E ; Fraiji, Nelson A ; Pereira, Rafael H M ; Parag, Kris V ; da Silva Peixoto, Pedro ; Kraemer, Moritz U G ; Oikawa, Marcio K ; Salomon, Tassila ; Cucunuba, Zulma M ; Castro, Márcia C ; de Souza Santos, Andreza Aruska ; Nascimento, Vítor H ; Pereira, Henrique S ; Ferguson, Neil M ; Pybus, Oliver G ; Kucharski, Adam ; Busch, Michael P ; Dye, Christopher ; Faria, Nuno R

The Lancet (British edition), 2021-02, Vol.397 (10273), p.452-455 [Periódico revisado por pares]

England: Elsevier Ltd

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3
SERAPHIM: studying environmental rasters and phylogenetically informed movements
SERAPHIM: studying environmental rasters and phylogenetically informed movements
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SERAPHIM: studying environmental rasters and phylogenetically informed movements

Dellicour, Simon ; Rose, Rebecca ; Faria, Nuno R ; Lemey, Philippe ; Pybus, Oliver G

Bioinformatics (Oxford, England), 2016-10, Vol.32 (20), p.3204-3206 [Periódico revisado por pares]

England

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4
Detection of Chikungunya virus in bodily fluids: The INOVACHIK cohort study
Detection of Chikungunya virus in bodily fluids: The INOVACHIK cohort study
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Detection of Chikungunya virus in bodily fluids: The INOVACHIK cohort study

Martins, Ezequias B ; Silva, Michele F B ; Tassinari, Wagner S ; de Bruycker-Nogueira, Fernanda ; Moraes, Isabella C V ; Rodrigues, Cintia D S ; Santos, Carolina C ; Sampaio, Simone A ; Pina-Costa, Anielle ; Fabri, Allison A ; Guerra-Campos, Vinícius ; Santos, Nayara A ; Faria, Nieli R C ; Filippis, Ana Maria B ; Brasil, Patrícia ; Calvet, Guilherme A Messer, William B.

PLoS neglected tropical diseases, 2022-03, Vol.16 (3), p.e0010242-e0010242 [Periódico revisado por pares]

United States: Public Library of Science

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5
Single cell analysis of lymph node tissue from HIV-1 infected patients reveals that the majority of CD4+ T-cells contain one HIV-1 DNA molecule
Single cell analysis of lymph node tissue from HIV-1 infected patients reveals that the majority of CD4+ T-cells contain one HIV-1 DNA molecule
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Single cell analysis of lymph node tissue from HIV-1 infected patients reveals that the majority of CD4+ T-cells contain one HIV-1 DNA molecule

Josefsson, Lina ; Palmer, Sarah ; Faria, Nuno R ; Lemey, Philippe ; Casazza, Joseph ; Ambrozak, David ; Kearney, Mary ; Shao, Wei ; Kottilil, Shyamasundaran ; Sneller, Michael ; Mellors, John ; Coffin, John M ; Maldarelli, Frank Luban, Jeremy

PLoS pathogens, 2013, Vol.9 (6), p.e1003432-e1003432 [Periódico revisado por pares]

United States: Public Library of Science

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6
Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa
Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa
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Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa

Faria, Nuno R ; Vidal, Nicole ; Lourenco, José ; Raghwani, Jayna ; Sigaloff, Kim C E ; Tatem, Andy J ; van de Vijver, David A M ; Pineda-Peña, Andrea-Clemencia ; Rose, Rebecca ; Wallis, Carole L ; Ahuka-Mundeke, Steve ; Muyembe-Tamfum, Jean-Jacques ; Muwonga, Jérémie ; Suchard, Marc A ; Rinke de Wit, Tobias F ; Hamers, Raph L ; Ndembi, Nicaise ; Baele, Guy ; Peeters, Martine ; Pybus, Oliver G ; Lemey, Philippe ; Dellicour, Simon Swanstrom, Ronald

PLoS pathogens, 2019-12, Vol.15 (12), p.e1007976-e1007976 [Periódico revisado por pares]

United States: Public Library of Science

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7
Epidemiology of COVID-19 after Emergence of SARS-CoV-2 Gamma Variant, Brazilian Amazon, 2020-2021
Epidemiology of COVID-19 after Emergence of SARS-CoV-2 Gamma Variant, Brazilian Amazon, 2020-2021
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Epidemiology of COVID-19 after Emergence of SARS-CoV-2 Gamma Variant, Brazilian Amazon, 2020-2021

Nicolete, Vanessa C ; Rodrigues, Priscila T ; Fernandes, Anderson R J ; Corder, Rodrigo M ; Tonini, Juliana ; Buss, Lewis F ; Sales, Flávia C ; Faria, Nuno R ; Sabino, Ester C ; Castro, Marcia C ; Ferreira, Marcelo U

Emerging infectious diseases, 2022-03, Vol.28 (3), p.709-712 [Periódico revisado por pares]

United States: U.S. National Center for Infectious Diseases

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8
Spread of Chikungunya Virus East/Central/South African Genotype in Northeast Brazil
Spread of Chikungunya Virus East/Central/South African Genotype in Northeast Brazil
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Spread of Chikungunya Virus East/Central/South African Genotype in Northeast Brazil

Charlys da Costa, Antonio ; Thézé, Julien ; Komninakis, Shirley Cavalcante Vasconcelos ; Sanz-Duro, Rodrigo Lopes ; Felinto, Marta Rejane Lemos ; Moura, Lúcia Cristina Corrêa ; Barroso, Ivoneide Moreira de Oliveira ; Santos, Lucineide Eliziario Correia ; Nunes, Mardjane Alves de Lemos ; Moura, Adriana Avila ; Lourenço, José ; Deng, Xutao ; Delwart, Eric L ; Guimarães, Maria Raquel Dos Anjos Silva ; Pybus, Oliver G ; Sabino, Ester C ; Faria, Nuno R

Emerging infectious diseases, 2017-10, Vol.23 (10), p.1742-1744 [Periódico revisado por pares]

United States: U.S. National Center for Infectious Diseases

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9
Mapping environmental suitability of Haemagogus and Sabethes spp. mosquitoes to understand sylvatic transmission risk of yellow fever virus in Brazil
Mapping environmental suitability of Haemagogus and Sabethes spp. mosquitoes to understand sylvatic transmission risk of yellow fever virus in Brazil
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Mapping environmental suitability of Haemagogus and Sabethes spp. mosquitoes to understand sylvatic transmission risk of yellow fever virus in Brazil

Li, Sabrina L ; Acosta, André L ; Hill, Sarah C ; Brady, Oliver J ; de Almeida, Marco A B ; Cardoso, Jader da C ; Hamlet, Arran ; Mucci, Luis F ; Telles de Deus, Juliana ; Iani, Felipe C M ; Alexander, Neil S ; Wint, G R William ; Pybus, Oliver G ; Kraemer, Moritz U G ; Faria, Nuno R ; Messina, Jane P Wu, Joseph T.

PLoS neglected tropical diseases, 2022-01, Vol.16 (1), p.e0010019 [Periódico revisado por pares]

United States: Public Library of Science

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10
A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes
A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes
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A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes

Fonseca, Vagner ; Libin, Pieter J K ; Theys, Kristof ; Faria, Nuno R ; Nunes, Marcio R T ; Restovic, Maria I ; Freire, Murilo ; Giovanetti, Marta ; Cuypers, Lize ; Nowé, Ann ; Abecasis, Ana ; Deforche, Koen ; Santiago, Gilberto A ; Siqueira, Isadora C de ; San, Emmanuel J ; Machado, Kaliane C B ; Azevedo, Vasco ; Filippis, Ana Maria Bispo-de ; Cunha, Rivaldo Venâncio da ; Pybus, Oliver G ; Vandamme, Anne-Mieke ; Alcantara, Luiz C J ; de Oliveira, Tulio Rodriguez-Barraquer, Isabel

PLoS neglected tropical diseases, 2019-05, Vol.13 (5), p.e0007231 [Periódico revisado por pares]

United States: Public Library of Science

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