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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

Couvin, David ; Bernheim, Aude ; Toffano-Nioche, Claire ; Touchon, Marie ; Michalik, Juraj ; Néron, Bertrand ; Rocha, Eduardo P C ; Vergnaud, Gilles ; Gautheret, Daniel ; Pourcel, Christine

Nucleic acids research, 2018-07, Vol.46 (W1), p.W246-W251 [Periódico revisado por pares]

England: Oxford University Press

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2
Neutral Theory, Microbial Practice: Challenges in Bacterial Population Genetics
Neutral Theory, Microbial Practice: Challenges in Bacterial Population Genetics
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Neutral Theory, Microbial Practice: Challenges in Bacterial Population Genetics

Rocha, Eduardo P C Kumar, Sudhir

Molecular biology and evolution, 2018-06, Vol.35 (6), p.1338-1347 [Periódico revisado por pares]

United States: Oxford University Press (OUP)

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3
The adaptation of temperate bacteriophages to their host genomes
The adaptation of temperate bacteriophages to their host genomes
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The adaptation of temperate bacteriophages to their host genomes

Bobay, Louis-Marie ; Rocha, Eduardo P C ; Touchon, Marie

Molecular biology and evolution, 2013-04, Vol.30 (4), p.737-751 [Periódico revisado por pares]

United States: Oxford Publishing Limited (England)

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4
Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion
Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion
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Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion

Pfeifer, Eugen ; Bonnin, Rémy A. ; Rocha, Eduardo P. C. Goldman, Gustavo H.

mBio, 2022-10, Vol.13 (5), p.e0185122-e0185122 [Periódico revisado por pares]

1752 N St., N.W., Washington, DC: American Society for Microbiology

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5
Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion
Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion
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Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion

Guglielmini, Julien ; Néron, Bertrand ; Abby, Sophie S ; Garcillán-Barcia, María Pilar ; la Cruz, Fernando de ; Rocha, Eduardo P. C

Nucleic acids research, 2014-05, Vol.42 (9), p.5715-5727 [Periódico revisado por pares]

England: Oxford University Press

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6
Evolution of conjugation and type IV secretion systems
Evolution of conjugation and type IV secretion systems
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Evolution of conjugation and type IV secretion systems

Guglielmini, Julien ; de la Cruz, Fernando ; Rocha, Eduardo P C

Molecular biology and evolution, 2013-02, Vol.30 (2), p.315-331 [Periódico revisado por pares]

United States: Oxford Publishing Limited (England)

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7
Causes of Insertion Sequences Abundance in Prokaryotic Genomes
Causes of Insertion Sequences Abundance in Prokaryotic Genomes
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Causes of Insertion Sequences Abundance in Prokaryotic Genomes

Touchon, Marie ; Rocha, Eduardo P. C

Molecular biology and evolution, 2007-04, Vol.24 (4), p.969-981 [Periódico revisado por pares]

United States: Oxford University Press

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8
Competition between lysogenic and sensitive bacteria is determined by the fitness costs of the different emerging phage-resistance strategies
Competition between lysogenic and sensitive bacteria is determined by the fitness costs of the different emerging phage-resistance strategies
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Competition between lysogenic and sensitive bacteria is determined by the fitness costs of the different emerging phage-resistance strategies

Rendueles, Olaya ; de Sousa, Jorge A M ; Rocha, Eduardo P C

eLife, 2023-03, Vol.12 [Periódico revisado por pares]

England: eLife Sciences Publication

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9
Structural and Genomic Evolution of RRNPPA Systems and Their Pheromone Signaling
Structural and Genomic Evolution of RRNPPA Systems and Their Pheromone Signaling
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Structural and Genomic Evolution of RRNPPA Systems and Their Pheromone Signaling

Felipe-Ruiz, Alonso ; Marina, Alberto ; Rocha, Eduardo P C Brennan, Richard Gerald

mBio, 2022-12, Vol.13 (6), p.e0251422-e0251422 [Periódico revisado por pares]

United States: American Society for Microbiology

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10
An analysis of determinants of amino acids substitution rates in bacterial proteins
An analysis of determinants of amino acids substitution rates in bacterial proteins
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An analysis of determinants of amino acids substitution rates in bacterial proteins

Rocha, Eduardo P C ; Danchin, Antoine

Molecular biology and evolution, 2004-01, Vol.21 (1), p.108-116 [Periódico revisado por pares]

United States

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