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CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance
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CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance

Nicholls, Samuel M ; Poplawski, Radoslaw ; Bull, Matthew J ; Underwood, Anthony ; Chapman, Michael ; Abu-Dahab, Khalil ; Taylor, Ben ; Colquhoun, Rachel M ; Rowe, Will P M ; Jackson, Ben ; Hill, Verity ; O'Toole, Áine ; Rey, Sara ; Southgate, Joel ; Amato, Roberto ; Livett, Rich ; Gonçalves, Sónia ; Harrison, Ewan M ; Peacock, Sharon J ; Aanensen, David M ; Rambaut, Andrew ; Connor, Thomas R ; Loman, Nicholas J

Genome Biology, 2021-07, Vol.22 (1), p.196-196, Article 196 [Periódico revisado por pares]

England: BioMed Central

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2
Mycobacterial dihydrofolate reductase inhibitors identified using chemogenomic methods and in vitro validation
Mycobacterial dihydrofolate reductase inhibitors identified using chemogenomic methods and in vitro validation
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Mycobacterial dihydrofolate reductase inhibitors identified using chemogenomic methods and in vitro validation

Mugumbate, Grace ; Abrahams, Katherine A ; Cox, Jonathan A G ; Papadatos, George ; van Westen, Gerard ; Lelièvre, Joël ; Calus, Szymon T ; Loman, Nicholas J ; Ballell, Lluis ; Barros, David ; Overington, John P ; Besra, Gurdyal S Tyagi, Anil Kumar

PloS one, 2015-03, Vol.10 (3), p.e0121492-e0121492 [Periódico revisado por pares]

United States: Public Library of Science

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3
The first horse herders and the impact of early Bronze Age steppe expansions into Asia
The first horse herders and the impact of early Bronze Age steppe expansions into Asia
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The first horse herders and the impact of early Bronze Age steppe expansions into Asia

de Barros Damgaard, Peter ; Martiniano, Rui ; Kamm, Jack ; Moreno-Mayar, J Víctor ; Kroonen, Guus ; Peyrot, Michaël ; Barjamovic, Gojko ; Rasmussen, Simon ; Zacho, Claus ; Baimukhanov, Nurbol ; Zaibert, Victor ; Merz, Victor ; Biddanda, Arjun ; Merz, Ilja ; Loman, Valeriy ; Evdokimov, Valeriy ; Usmanova, Emma ; Hemphill, Brian ; Seguin-Orlando, Andaine ; Yediay, Fulya Eylem ; Ullah, Inam ; Sjögren, Karl-Göran ; Iversen, Katrine Højholt ; Choin, Jeremy ; de la Fuente, Constanza ; Ilardo, Melissa ; Schroeder, Hannes ; Moiseyev, Vyacheslav ; Gromov, Andrey ; Polyakov, Andrei ; Omura, Sachihiro ; Senyurt, Süleyman Yücel ; Ahmad, Habib ; McKenzie, Catriona ; Margaryan, Ashot ; Hameed, Abdul ; Samad, Abdul ; Gul, Nazish ; Khokhar, Muhammad Hassan ; Goriunova, O I ; Bazaliiskii, Vladimir I ; Novembre, John ; Weber, Andrzej W ; Orlando, Ludovic ; Allentoft, Morten E ; Nielsen, Rasmus ; Kristiansen, Kristian ; Sikora, Martin ; Outram, Alan K ; Durbin, Richard ; Willerslev, Eske

Science (American Association for the Advancement of Science), 2018-06, Vol.360 (6396) [Periódico revisado por pares]

United States: The American Association for the Advancement of Science

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4
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil
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Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil

Faria, Nuno R ; Mellan, Thomas A ; Whittaker, Charles ; Claro, Ingra M ; Candido, Darlan da S ; Mishra, Swapnil ; Crispim, Myuki A E ; Sales, Flavia C S ; Hawryluk, Iwona ; McCrone, John T ; Hulswit, Ruben J G ; Franco, Lucas A M ; Ramundo, Mariana S ; de Jesus, Jaqueline G ; Andrade, Pamela S ; Coletti, Thais M ; Ferreira, Giulia M ; Silva, Camila A M ; Manuli, Erika R ; Pereira, Rafael H M ; Peixoto, Pedro S ; Kraemer, Moritz U G ; Gaburo, Jr, Nelson ; Camilo, Cecilia da C ; Hoeltgebaum, Henrique ; Souza, William M ; Rocha, Esmenia C ; de Souza, Leandro M ; de Pinho, Mariana C ; Araujo, Leonardo J T ; Malta, Frederico S V ; de Lima, Aline B ; Silva, Joice do P ; Zauli, Danielle A G ; Ferreira, Alessandro C de S ; Schnekenberg, Ricardo P ; Laydon, Daniel J ; Walker, Patrick G T ; Schlüter, Hannah M ; Dos Santos, Ana L P ; Vidal, Maria S ; Del Caro, Valentina S ; Filho, Rosinaldo M F ; Dos Santos, Helem M ; Aguiar, Renato S ; Proença-Modena, José L ; Nelson, Bruce ; Hay, James A ; Monod, Mélodie ; Miscouridou, Xenia ; Coupland, Helen ; Sonabend, Raphael ; Vollmer, Michaela ; Gandy, Axel ; Prete, Jr, Carlos A ; Nascimento, Vitor H ; Suchard, Marc A ; Bowden, Thomas A ; Pond, Sergei L K ; Wu, Chieh-Hsi ; Ratmann, Oliver ; Ferguson, Neil M ; Dye, Christopher ; Loman, Nick J ; Lemey, Philippe ; Rambaut, Andrew ; Fraiji, Nelson A ; Carvalho, Maria do P S S ; Pybus, Oliver G ; Flaxman, Seth ; Bhatt, Samir ; Sabino, Ester C

Science (American Association for the Advancement of Science), 2021-05, Vol.372 (6544), p.815-821 [Periódico revisado por pares]

United States: The American Association for the Advancement of Science

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5
The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats
The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats
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The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats

Woo, Patrick C Y ; Lau, Susanna K P ; Tse, Herman ; Teng, Jade L L ; Curreem, Shirly O T ; Tsang, Alan K L ; Fan, Rachel Y Y ; Wong, Gilman K M ; Huang, Yi ; Loman, Nicholas J ; Snyder, Lori A S ; Cai, James J ; Huang, Jian-Dong ; Mak, William ; Pallen, Mark J ; Lok, Si ; Yuen, Kwok-Yung Richardson, Paul M.

PLoS genetics, 2009-03, Vol.5 (3), p.e1000416-e1000416 [Periódico revisado por pares]

United States: Public Library of Science

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6
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018
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Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018

Hill, Sarah C ; de Souza, Renato ; Thézé, Julien ; Claro, Ingra ; Aguiar, Renato S ; Abade, Leandro ; Santos, Fabiana C P ; Cunha, Mariana S ; Nogueira, Juliana S ; Salles, Flavia C S ; Rocco, Iray M ; Maeda, Adriana Y ; Vasami, Fernanda G S ; du Plessis, Louis ; Silveira, Paola P ; de Jesus, Jaqueline G ; Quick, Joshua ; Fernandes, Natália C C A ; Guerra, Juliana M ; Réssio, Rodrigo A ; Giovanetti, Marta ; Alcantara, Luiz C J ; Cirqueira, Cinthya S ; Díaz-Delgado, Josué ; Macedo, Fernando L L ; Timenetsky, Maria do Carmo S T ; de Paula, Regiane ; Spinola, Roberta ; Telles de Deus, Juliana ; Mucci, Luís F ; Tubaki, Rosa Maria ; de Menezes, Regiane M T ; Ramos, Patrícia L ; de Abreu, Andre L ; Cruz, Laura N ; Loman, Nick ; Dellicour, Simon ; Pybus, Oliver G ; Sabino, Ester C ; Faria, Nuno R Lauring, Adam S.

PLoS pathogens, 2020-08, Vol.16 (8), p.e1008699-e1008699 [Periódico revisado por pares]

United States: Public Library of Science

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7
Molecular Classification of Familial Non-BRCA1/BRCA2 Breast Cancer
Molecular Classification of Familial Non-BRCA1/BRCA2 Breast Cancer
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Molecular Classification of Familial Non-BRCA1/BRCA2 Breast Cancer

Hedenfalk, Ingrid ; Ringnér, Markus ; Ben-Dor, Amir ; Yakhini, Zohar ; Chen, Yidong ; Chebil, Gunilla ; Ach, Robert ; Loman, Niklas ; Olsson, Håkan ; Meltzer, Paul ; Borg, Åke ; Trent, Jeffrey

Proceedings of the National Academy of Sciences - PNAS, 2003-03, Vol.100 (5), p.2532-2537 [Periódico revisado por pares]

United States: National Academy of Sciences

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8
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK
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The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK

Hill, Verity ; Du Plessis, Louis ; Peacock, Thomas P ; Aggarwal, Dinesh ; Colquhoun, Rachel ; Carabelli, Alesandro M ; Ellaby, Nicholas ; Gallagher, Eileen ; Groves, Natalie ; Jackson, Ben ; McCrone, J T ; O’Toole, Áine ; Price, Anna ; Sanderson, Theo ; Scher, Emily ; Southgate, Joel ; Volz, Erik ; Barclay, Wendy S ; Barrett, Jeffrey C ; Chand, Meera ; Connor, Thomas ; Goodfellow, Ian ; Gupta, Ravindra K ; Harrison, Ewan M ; Loman, Nicholas ; Myers, Richard ; Robertson, David L ; Pybus, Oliver G ; Rambaut, Andrew

Virus evolution, 2022-12, Vol.8 (2), p.veac080-veac080 [Periódico revisado por pares]

UK: Oxford University Press

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9
Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium
Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium
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Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium

Freschi, Luca ; Jeukens, Julie ; Kukavica-Ibrulj, Irena ; Boyle, Brian ; Dupont, Marie-Josée ; Laroche, Jérôme ; Larose, Stéphane ; Maaroufi, Halim ; Fothergill, Joanne L ; Moore, Matthew ; Winsor, Geoffrey L ; Aaron, Shawn D ; Barbeau, Jean ; Bell, Scott C ; Burns, Jane L ; Camara, Miguel ; Cantin, André ; Charette, Steve J ; Dewar, Ken ; Déziel, Éric ; Grimwood, Keith ; Hancock, Robert E W ; Harrison, Joe J ; Heeb, Stephan ; Jelsbak, Lars ; Jia, Baofeng ; Kenna, Dervla T ; Kidd, Timothy J ; Klockgether, Jens ; Lam, Joseph S ; Lamont, Iain L ; Lewenza, Shawn ; Loman, Nick ; Malouin, François ; Manos, Jim ; McArthur, Andrew G ; McKeown, Josie ; Milot, Julie ; Naghra, Hardeep ; Nguyen, Dao ; Pereira, Sheldon K ; Perron, Gabriel G ; Pirnay, Jean-Paul ; Rainey, Paul B ; Rousseau, Simon ; Santos, Pedro M ; Stephenson, Anne ; Taylor, Véronique ; Turton, Jane F ; Waglechner, Nicholas ; Williams, Paul ; Thrane, Sandra W ; Wright, Gerard D ; Brinkman, Fiona S L ; Tucker, Nicholas P ; Tümmler, Burkhard ; Winstanley, Craig ; Levesque, Roger C

Frontiers in microbiology, 2015-09, Vol.6, p.1036 [Periódico revisado por pares]

Switzerland: Frontiers Media

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10
Genomics-informed outbreak investigations of SARS-CoV-2 using civet
Genomics-informed outbreak investigations of SARS-CoV-2 using civet
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Genomics-informed outbreak investigations of SARS-CoV-2 using civet

O'Toole, Áine ; Hill, Verity ; Jackson, Ben ; Dewar, Rebecca ; Sahadeo, Nikita ; Colquhoun, Rachel ; Rooke, Stefan ; McCrone, J T ; Duggan, Kate ; McHugh, Martin P ; Nicholls, Samuel M ; Poplawski, Radoslaw ; Aanensen, David ; Holden, Matt ; Connor, Tom ; Loman, Nick ; Goodfellow, Ian ; Carrington, Christine V F ; Templeton, Kate ; Rambaut, Andrew Guimarães, Ana Marcia de Sá

PLOS global public health, 2022, Vol.2 (12), p.e0000704-e0000704 [Periódico revisado por pares]

United States: Public Library of Science (PLoS)

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