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1
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Afgan, Enis ; Nekrutenko, Anton ; Grüning, Bjórn A ; Blankenberg, Daniel ; Goecks, Jeremy ; Schatz, Michael C ; Ostrovsky, Alexander E ; Mahmoud, Alexandru ; Lonie, Andrew J ; Syme, Anna ; Bretaudeau, Anthony ; Kumar, Anup ; Eschenlauer, Arthur C ; DeSanto, Assunta D ; Guerler, Aysam ; Serrano-Solano, Beatriz ; Batut, Bérénice ; Grüning, Björn A ; Langhorst, Bradley W ; Carr, Bridget ; Raubenolt, Bryan A ; Hyde, Cameron J ; Bromhead, Catherine J ; Barnett, Christopher B ; Royaux, Coline ; Gallardo, Cristóbal ; Fornika, Daniel J ; Baker, Dannon ; Bouvier, Dave ; Clements, Dave ; de Lima Morais, David A ; Tabernero, David Lopez ; Lariviere, Delphine ; Nasr, Engy ; Zambelli, Federico ; Heyl, Florian ; Psomopoulos, Fotis ; Coppens, Frederik ; Price, Gareth R ; Cuccuru, Gianmauro ; Corguillé, Gildas Le ; Von Kuster, Greg ; Akbulut, Gulsum Gudukbay ; Rasche, Helena ; Hotz, Hans-Rudolf ; Eguinoa, Ignacio ; Makunin, Igor ; Ranawaka, Isuru J ; Taylor, James P ; Joshi, Jayadev ; Hillman-Jackson, Jennifer ; Chilton, John M ; Kamali, Kaivan ; Suderman, Keith ; Poterlowicz, Krzysztof ; Yvan, Le Bras ; Lopez-Delisle, Lucille ; Sargent, Luke ; Bassetti, Madeline E ; Tangaro, Marco Antonio ; van den Beek, Marius ; Čech, Martin ; Bernt, Matthias ; Fahrner, Matthias ; Tekman, Mehmet ; Föll, Melanie C ; Crusoe, Michael R ; Roncoroni, Miguel ; Kucher, Natalie ; Coraor, Nate ; Stoler, Nicholas ; Rhodes, Nick ; Soranzo, Nicola ; Pinter, Niko ; Goonasekera, Nuwan A ; Moreno, Pablo A ; Videm, Pavankumar ; Melanie, Petera ; Mandreoli, Pietro ; Jagtap, Pratik D ; Gu, Qiang ; Weber, Ralf J M ; Lazarus, Ross ; Vorderman, Ruben H P ; Hiltemann, Saskia ; Golitsynskiy, Sergey ; Garg, Shilpa ; Bray, Simon A ; Gladman, Simon L ; Leo, Simone ; Mehta, Subina P ; Griffin, Timothy J ; Jalili, Vahid ; Yves, Vandenbrouck ; Wen, Victor ; Nagampalli, Vijay K ; Bacon, Wendi A ; de Koning, Willem ; Maier, Wolfgang ; Briggs, Peter J

Nucleic acids research, 2022-07, Vol.50 (W1), p.W345-W351 [Periódico revisado por pares]

England: Oxford University Press

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2
SynergyFinder 3.0: an interactive analysis and consensus interpretation of multi-drug synergies across multiple samples
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Artigo
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SynergyFinder 3.0: an interactive analysis and consensus interpretation of multi-drug synergies across multiple samples

Ianevski, Aleksandr ; Giri, Anil K ; Aittokallio, Tero

Nucleic acids research, 2022-07, Vol.50 (W1), p.W739-W743 [Periódico revisado por pares]

England: Oxford University Press

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3
Waves of sumoylation support transcription dynamics during adipocyte differentiation
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Waves of sumoylation support transcription dynamics during adipocyte differentiation

Zhao, Xu ; Hendriks, Ivo A ; Le Gras, Stéphanie ; Ye, Tao ; Ramos-Alonso, Lucía ; Nguéa P, Aurélie ; Lien, Guro Flor ; Ghasemi, Fatemeh ; Klungland, Arne ; Jost, Bernard ; Enserink, Jorrit M ; Nielsen, Michael L ; Chymkowitch, Pierre

Nucleic acids research, 2022-02, Vol.50 (3), p.1351-1369 [Periódico revisado por pares]

England: Oxford University Press

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4
RSAT 2022: regulatory sequence analysis tools
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RSAT 2022: regulatory sequence analysis tools

Santana-Garcia, Walter ; Castro-Mondragon, Jaime A ; Padilla-Gálvez, Mónica ; Nguyen, Nga Thi Thuy ; Elizondo-Salas, Ana ; Ksouri, Najla ; Gerbes, François ; Thieffry, Denis ; Vincens, Pierre ; Contreras-Moreira, Bruno ; van Helden, Jacques ; Thomas-Chollier, Morgane ; Medina-Rivera, Alejandra

Nucleic acids research, 2022-07, Vol.50 (W1), p.W670-W676 [Periódico revisado por pares]

England: Oxford University Press

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5
SOX9 reprograms endothelial cells by altering the chromatin landscape
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Artigo
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SOX9 reprograms endothelial cells by altering the chromatin landscape

Fuglerud, Bettina M ; Drissler, Sibyl ; Lotto, Jeremy ; Stephan, Tabea L ; Thakur, Avinash ; Cullum, Rebecca ; Hoodless, Pamela A

Nucleic acids research, 2022-08, Vol.50 (15), p.8547-8565 [Periódico revisado por pares]

Oxford University Press

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6
The silencing of ets-4 mRNA relies on the functional cooperation between REGE-1/Regnase-1 and RLE-1/Roquin-1
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Artigo
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The silencing of ets-4 mRNA relies on the functional cooperation between REGE-1/Regnase-1 and RLE-1/Roquin-1

Sobańska, Daria ; Komur, Alicja A ; Chabowska-Kita, Agnieszka ; Gumna, Julita ; Kumari, Pooja ; Pachulska-Wieczorek, Katarzyna ; Ciosk, Rafal

Nucleic acids research, 2022-08, Vol.50 (14), p.8226-8239 [Periódico revisado por pares]

Oxford University Press

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7
sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms
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Artigo
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sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms

Aparicio-Puerta, Ernesto ; Gómez-Martín, Cristina ; Giannoukakos, Stavros ; Medina, José María ; Scheepbouwer, Chantal ; García-Moreno, Adrián ; Carmona-Saez, Pedro ; Fromm, Bastian ; Pegtel, Michiel ; Keller, Andreas ; Marchal, Juan Antonio ; Hackenberg, Michael

Nucleic acids research, 2022-07, Vol.50 (W1), p.W710-W717 [Periódico revisado por pares]

England: Oxford University Press

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8
DrugVirus.info 2.0: an integrative data portal for broad-spectrum antivirals (BSA) and BSA-containing drug combinations (BCCs)
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Artigo
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DrugVirus.info 2.0: an integrative data portal for broad-spectrum antivirals (BSA) and BSA-containing drug combinations (BCCs)

Ianevski, Aleksandr ; Simonsen, Ronja M ; Myhre, Vegard ; Tenson, Tanel ; Oksenych, Valentyn ; Bjørås, Magnar ; Kainov, Denis E

Nucleic acids research, 2022-07, Vol.50 (W1), p.W272-W275 [Periódico revisado por pares]

England: Oxford University Press

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9
Loss of Mediator complex subunit 13 (MED13) promotes resistance to alkylation through cyclin D1 upregulation
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Artigo
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Loss of Mediator complex subunit 13 (MED13) promotes resistance to alkylation through cyclin D1 upregulation

Roliński, Miłosz ; Montaldo, Nicola Pietro ; Aksu, Merdane Ezgi ; Fordyce Martin, Sarah L ; Brambilla, Alessandro ; Kunath, Nicolas ; Johansen, Jostein ; Erlandsen, Sten Even ; Liabbak, Nina-Beate ; Rian, Kristin ; Bjørås, Magnar ; Sætrom, Pål ; van Loon, Barbara

Nucleic acids research, 2021-02, Vol.49 (3), p.1470-1484 [Periódico revisado por pares]

England: Oxford University Press

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