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Refinado por: assunto: Biochemistry & Molecular Biology remover
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1
Evaluation of the stereochemical quality of predicted RNA 3D models in the RNA-Puzzles submissions
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Evaluation of the stereochemical quality of predicted RNA 3D models in the RNA-Puzzles submissions

Carrascoza, Francisco ; Antczak, Maciej ; Miao, Zhichao ; Westhof, Eric ; Szachniuk, Marta

RNA (Cambridge), 2022-02, Vol.28 (2), p.250-262 [Periódico revisado por pares]

United States: Cold Spring Harbor Laboratory Press

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Computational study of protein secondary structure elements: Ramachandran plots revisited
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Computational study of protein secondary structure elements: Ramachandran plots revisited

Carrascoza, Francisco ; Zaric, Snezana ; Silaghi-Dumitrescu, Radu

Journal of molecular graphics & modelling, 2014-05, Vol.50, p.125-133 [Periódico revisado por pares]

United States: Elsevier Inc

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The high affinity of small-molecule antioxidants for hemoglobin
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The high affinity of small-molecule antioxidants for hemoglobin

Puscas, Cristina ; Radu, Luana ; Carrascoza, Francisco ; Mot, Augustin C. ; Amariei, Diana ; Lungu, Oana ; Scurtu, Florina ; Podea, Paula ; Septelean, Raluca ; Matei, Alina ; Mic, Mihaela ; Attia, Amr. A. ; Silaghi-Dumitrescu, Radu

Free radical biology & medicine, 2018-08, Vol.124, p.260-274 [Periódico revisado por pares]

United States: Elsevier Inc

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4
Performance comparison of computational methods for modeling alpha-helical structures
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Performance comparison of computational methods for modeling alpha-helical structures

Lupan, Alexandru ; Kun, Attila-Zsolt ; Carrascoza, Francisco ; Silaghi-Dumitrescu, Radu

Journal of molecular modeling, 2013, Vol.19 (1), p.193-203 [Periódico revisado por pares]

Berlin/Heidelberg: Springer-Verlag

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5
3D interaction homology: The hydropathic interaction environments of even alanine are diverse and provide novel structural insight
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3D interaction homology: The hydropathic interaction environments of even alanine are diverse and provide novel structural insight

Ahmed, Mostafa H. ; Catalano, Claudio ; Portillo, Samuel C. ; Safo, Martin K. ; Neel Scarsdale, J. ; Kellogg, Glen E.

Journal of structural biology, 2019-08, Vol.207 (2), p.183-198 [Periódico revisado por pares]

United States: Elsevier Inc

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6
Everyone Is a Protagonist: Residue Conformational Preferences in High-Resolution Protein Structures
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Everyone Is a Protagonist: Residue Conformational Preferences in High-Resolution Protein Structures

Ligabue-Braun, Rodrigo ; Borguesan, Bruno ; Verli, Hugo ; Krause, Mathias J ; Dorn, Márcio

Journal of computational biology, 2018-04, Vol.25 (4), p.451-465 [Periódico revisado por pares]

United States

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7
Protein secondary structure prediction: A survey of the state of the art
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Protein secondary structure prediction: A survey of the state of the art

Jiang, Qian ; Jin, Xin ; Lee, Shin-Jye ; Yao, Shaowen

Journal of molecular graphics & modelling, 2017-09, Vol.76, p.379-402 [Periódico revisado por pares]

United States: Elsevier Inc

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8
Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models
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Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models

Gumna, Julita ; Antczak, Maciej ; Adamiak, Ryszard W ; Bujnicki, Janusz M ; Chen, Shi-Jie ; Ding, Feng ; Ghosh, Pritha ; Li, Jun ; Mukherjee, Sunandan ; Nithin, Chandran ; Pachulska-Wieczorek, Katarzyna ; Ponce-Salvatierra, Almudena ; Popenda, Mariusz ; Sarzynska, Joanna ; Wirecki, Tomasz ; Zhang, Dong ; Zhang, Sicheng ; Zok, Tomasz ; Westhof, Eric ; Miao, Zhichao ; Szachniuk, Marta ; Rybarczyk, Agnieszka

International journal of molecular sciences, 2022-08, Vol.23 (17), p.9630 [Periódico revisado por pares]

Switzerland: MDPI AG

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9
In-Silico Template Selection of In-Vitro Evolved Kalata B1 of Oldenlandia Affinis for Scaffolding Peptide-Based Drug Design
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In-Silico Template Selection of In-Vitro Evolved Kalata B1 of Oldenlandia Affinis for Scaffolding Peptide-Based Drug Design

Senthilkumar, B. ; Kumar, Prakash ; Rajasekaran, R.

Journal of cellular biochemistry, 2016-01, Vol.117 (1), p.66-73 [Periódico revisado por pares]

United States: Blackwell Publishing Ltd

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10
Hydration of l-glycylvaline and l-glycylvalylglycine zwitterions: Structural and vibrational studies using DFT method
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Hydration of l-glycylvaline and l-glycylvalylglycine zwitterions: Structural and vibrational studies using DFT method

Koyambo-Konzapa, Stève-Jonathan ; Dhaouadi, Zoubeida ; Nsangou, Mama

Journal of molecular graphics & modelling, 2019-05, Vol.88, p.194-202 [Periódico revisado por pares]

United States: Elsevier Inc

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