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Finding lncRNA-Protein Interactions Based on Deep Learning With Dual-Net Neural Architecture
Finding lncRNA-Protein Interactions Based on Deep Learning With Dual-Net Neural Architecture
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Finding lncRNA-Protein Interactions Based on Deep Learning With Dual-Net Neural Architecture

Peng, Lihong ; Wang, Chang ; Tian, Xiongfei ; Zhou, Liqian ; Li, Keqin

IEEE/ACM transactions on computational biology and bioinformatics, 2022-11, Vol.19 (6), p.3456-3468 [Periódico revisado por pares]

United States: IEEE

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2
Deep Learning for Automated Feature Discovery and Classification of Sleep Stages
Deep Learning for Automated Feature Discovery and Classification of Sleep Stages
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Deep Learning for Automated Feature Discovery and Classification of Sleep Stages

Sokolovsky, Michael ; Guerrero, Francisco ; Paisarnsrisomsuk, Sarun ; Ruiz, Carolina ; Alvarez, Sergio A.

IEEE/ACM transactions on computational biology and bioinformatics, 2020-11, Vol.17 (6), p.1835-1845 [Periódico revisado por pares]

United States: IEEE

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3
ClusterViz: A Cytoscape APP for Cluster Analysis of Biological Network
ClusterViz: A Cytoscape APP for Cluster Analysis of Biological Network
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ClusterViz: A Cytoscape APP for Cluster Analysis of Biological Network

Wang, Jianxin ; Zhong, Jiancheng ; Chen, Gang ; Li, Min ; Wu, Fang-xiang ; Pan, Yi

IEEE/ACM transactions on computational biology and bioinformatics, 2015-07, Vol.12 (4), p.815-822 [Periódico revisado por pares]

United States: IEEE

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4
FHAST: FPGA-Based Acceleration of Bowtie in Hardware
FHAST: FPGA-Based Acceleration of Bowtie in Hardware
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FHAST: FPGA-Based Acceleration of Bowtie in Hardware

Fernandez, Edward B. ; Villarreal, Jason ; Lonardi, Stefano ; Najjar, Walid A.

IEEE/ACM transactions on computational biology and bioinformatics, 2015-09, Vol.12 (5), p.973-981 [Periódico revisado por pares]

United States: IEEE

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5
ZayyuNet - A Unified Deep Learning Model for the Identification of Epigenetic Modifications Using Raw Genomic Sequences
ZayyuNet - A Unified Deep Learning Model for the Identification of Epigenetic Modifications Using Raw Genomic Sequences
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ZayyuNet - A Unified Deep Learning Model for the Identification of Epigenetic Modifications Using Raw Genomic Sequences

Abbas, Zeeshan ; Tayara, Hilal ; Chong, Kil To

IEEE/ACM transactions on computational biology and bioinformatics, 2022-07, Vol.19 (4), p.2533-2544 [Periódico revisado por pares]

New York: IEEE

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6
Leveraging FPGAs for Accelerating Short Read Alignment
Leveraging FPGAs for Accelerating Short Read Alignment
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Leveraging FPGAs for Accelerating Short Read Alignment

Arram, James ; Kaplan, Thomas ; Luk, Wayne ; Jiang, Peiyong

IEEE/ACM transactions on computational biology and bioinformatics, 2017-05, Vol.14 (3), p.668-677 [Periódico revisado por pares]

United States: IEEE

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7
Semi-Supervised Deep Learning for Cell Type Identification From Single-Cell Transcriptomic Data
Semi-Supervised Deep Learning for Cell Type Identification From Single-Cell Transcriptomic Data
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Semi-Supervised Deep Learning for Cell Type Identification From Single-Cell Transcriptomic Data

Dong, Xishuang ; Chowdhury, Shanta ; Victor, Uboho ; Li, Xiangfang ; Qian, Lijun

IEEE/ACM transactions on computational biology and bioinformatics, 2023-03, Vol.20 (2), p.1492-1505 [Periódico revisado por pares]

United States: IEEE

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8
A Swarm Intelligence Framework for Reconstructing Gene Networks: Searching for Biologically Plausible Architectures
A Swarm Intelligence Framework for Reconstructing Gene Networks: Searching for Biologically Plausible Architectures
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A Swarm Intelligence Framework for Reconstructing Gene Networks: Searching for Biologically Plausible Architectures

Kentzoglanakis, K. ; Poole, M.

IEEE/ACM transactions on computational biology and bioinformatics, 2012-03, Vol.9 (2), p.358-371 [Periódico revisado por pares]

United States: IEEE

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9
DeepSide: A Deep Learning Approach for Drug Side Effect Prediction
DeepSide: A Deep Learning Approach for Drug Side Effect Prediction
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DeepSide: A Deep Learning Approach for Drug Side Effect Prediction

Uner, Onur Can ; Kuru, Halil Ibrahim ; Cinbis, R. Gokberk ; Tastan, Oznur ; Cicek, A. Ercument

IEEE/ACM transactions on computational biology and bioinformatics, 2023-01, Vol.20 (1), p.330-339 [Periódico revisado por pares]

United States: IEEE

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10
Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems
Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems
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Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems

Gonzalez-Dominguez, Jorge ; Wienbrandt, Lars ; Kassens, Jan Christian ; Ellinghaus, David ; Schimmler, Manfred ; Schmidt, Bertil

IEEE/ACM transactions on computational biology and bioinformatics, 2015-09, Vol.12 (5), p.982-994 [Periódico revisado por pares]

United States: IEEE

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