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GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
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GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

Warde-Farley, David ; Donaldson, Sylva L ; Comes, Ovi ; Zuberi, Khalid ; Badrawi, Rashad ; Chao, Pauline ; Franz, Max ; Grouios, Chris ; Kazi, Farzana ; Lopes, Christian Tannus ; Maitland, Anson ; Mostafavi, Sara ; Montojo, Jason ; Shao, Quentin ; Wright, George ; Bader, Gary D ; Morris, Quaid

Nucleic acids research, 2010-07, Vol.38 (Web Server issue), p.W214-W220 [Periódico revisado por pares]

England: Oxford University Press

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Fast integration of heterogeneous data sources for predicting gene function with limited annotation
Fast integration of heterogeneous data sources for predicting gene function with limited annotation
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Fast integration of heterogeneous data sources for predicting gene function with limited annotation

Mostafavi, Sara ; Morris, Quaid

Bioinformatics, 2010-07, Vol.26 (14), p.1759-1765 [Periódico revisado por pares]

Oxford: Oxford University Press

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3
Contributions of steroidogenic factor 1 to the transcription landscape of Y1 mouse adrenocortical tumor cells
Contributions of steroidogenic factor 1 to the transcription landscape of Y1 mouse adrenocortical tumor cells
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Contributions of steroidogenic factor 1 to the transcription landscape of Y1 mouse adrenocortical tumor cells

Schimmer, Bernard P. ; Tsao, Jennivine ; Cordova, Martha ; Mostafavi, Sara ; Morris, Quaid ; Scheys, Joshua O.

Molecular and cellular endocrinology, 2011-04, Vol.336 (1-2), p.85-91 [Periódico revisado por pares]

Ireland: Elsevier Ireland Ltd

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4
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function
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GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

Mostafavi, Sara ; Ray, Debajyoti ; Warde-Farley, David ; Grouios, Chris ; Morris, Quaid

Genome biology, 2008-01, Vol.9 Suppl 1 (Suppl 1), p.S4-S4 [Periódico revisado por pares]

England: BioMed Central Ltd

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5
Genetic Landscape of a Cell
Genetic Landscape of a Cell
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Genetic Landscape of a Cell

Costanzo, Michael ; Baryshnikova, Anastasia ; Bellay, Jeremy ; Kim, Yungil ; Spear, Eric D ; Sevier, Carolyn S ; Ding, Huiming ; Koh, Judice L.Y ; Toufighi, Kiana ; Mostafavi, Sara ; Prinz, Jeany ; St. Onge, Robert P ; VanderSluis, Benjamin ; Makhnevych, Taras ; Vizeacoumar, Franco J ; Alizadeh, Solmaz ; Bahr, Sondra ; Brost, Renee L ; Chen, Yiqun ; Cokol, Murat ; Deshpande, Raamesh ; Li, Zhijian ; Lin, Zhen-Yuan ; Liang, Wendy ; Marback, Michaela ; Paw, Jadine ; San Luis, Bryan-Joseph ; Shuteriqi, Ermira ; Tong, Amy Hin Yan ; van Dyk, Nydia ; Wallace, Iain M ; Whitney, Joseph A ; Weirauch, Matthew T ; Zhong, Guoqing ; Zhu, Hongwei ; Houry, Walid A ; Brudno, Michael ; Ragibizadeh, Sasan ; Papp, Balázs ; Pál, Csaba ; Roth, Frederick P ; Giaever, Guri ; Nislow, Corey ; Troyanskaya, Olga G ; Bussey, Howard ; Bader, Gary D ; Gingras, Anne-Claude ; Morris, Quaid D ; Kim, Philip M ; Kaiser, Chris A ; Myers, Chad L ; Andrews, Brenda J ; Boone, Charles

Science (American Association for the Advancement of Science), 2010-01, Vol.327 (5964), p.425-431 [Periódico revisado por pares]

Washington, DC: American Association for the Advancement of Science

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6
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence
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A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

Peña-Castillo, Lourdes ; Tasan, Murat ; Myers, Chad L ; Lee, Hyunju ; Joshi, Trupti ; Zhang, Chao ; Guan, Yuanfang ; Leone, Michele ; Pagnani, Andrea ; Kim, Wan Kyu ; Krumpelman, Chase ; Tian, Weidong ; Obozinski, Guillaume ; Qi, Yanjun ; Mostafavi, Sara ; Lin, Guan Ning ; Berriz, Gabriel F ; Gibbons, Francis D ; Lanckriet, Gert ; Qiu, Jian ; Grant, Charles ; Barutcuoglu, Zafer ; Hill, David P ; Warde-Farley, David ; Grouios, Chris ; Ray, Debajyoti ; Blake, Judith A ; Deng, Minghua ; Jordan, Michael I ; Noble, William S ; Morris, Quaid ; Klein-Seetharaman, Judith ; Bar-Joseph, Ziv ; Chen, Ting ; Sun, Fengzhu ; Troyanskaya, Olga G ; Marcotte, Edward M ; Xu, Dong ; Hughes, Timothy R ; Roth, Frederick P

Genome biology, 2008-01, Vol.9 Suppl 1 (Suppl 1), p.S2-S2 [Periódico revisado por pares]

England: BioMed Central Ltd

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7
Unsupervised detection of genes of influence in lung cancer using biological networks
Unsupervised detection of genes of influence in lung cancer using biological networks
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Unsupervised detection of genes of influence in lung cancer using biological networks

Goldenberg, Anna ; Mostafavi, Sara ; Quon, Gerald ; Boutros, Paul C ; Morris, Quaid D

Bioinformatics, 2011-11, Vol.27 (22), p.3166-3172 [Periódico revisado por pares]

Oxford: Oxford University Press

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8
The number of CG iterations and computation time of the GeneMANIA algorithm as a function of number of genes
The number of CG iterations and computation time of the GeneMANIA algorithm as a function of number of genes
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The number of CG iterations and computation time of the GeneMANIA algorithm as a function of number of genes

Mostafavi, Sara ; Debajyoti Ray ; Warde-Farley, David ; Grouios, Chris ; Quaid Morris

figshare 2011

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9
Prediction performance of GeneMANIA in the presence of irrelevant and redundant networks
Prediction performance of GeneMANIA in the presence of irrelevant and redundant networks
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Prediction performance of GeneMANIA in the presence of irrelevant and redundant networks

Mostafavi, Sara ; Debajyoti Ray ; Warde-Farley, David ; Grouios, Chris ; Quaid Morris

figshare 2011

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10
Prediction performance of GeneMANIA on the extended yeast benchmark
Prediction performance of GeneMANIA on the extended yeast benchmark
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Prediction performance of GeneMANIA on the extended yeast benchmark

Mostafavi, Sara ; Debajyoti Ray ; Warde-Farley, David ; Grouios, Chris ; Quaid Morris

figshare 2011

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