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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Afgan, Enis ; Nekrutenko, Anton ; Grüning, Bjórn A ; Blankenberg, Daniel ; Goecks, Jeremy ; Schatz, Michael C ; Ostrovsky, Alexander E ; Mahmoud, Alexandru ; Lonie, Andrew J ; Syme, Anna ; Bretaudeau, Anthony ; Kumar, Anup ; Eschenlauer, Arthur C ; DeSanto, Assunta D ; Guerler, Aysam ; Serrano-Solano, Beatriz ; Batut, Bérénice ; Grüning, Björn A ; Langhorst, Bradley W ; Carr, Bridget ; Raubenolt, Bryan A ; Hyde, Cameron J ; Bromhead, Catherine J ; Barnett, Christopher B ; Royaux, Coline ; Gallardo, Cristóbal ; Fornika, Daniel J ; Baker, Dannon ; Bouvier, Dave ; Clements, Dave ; de Lima Morais, David A ; Tabernero, David Lopez ; Lariviere, Delphine ; Nasr, Engy ; Zambelli, Federico ; Heyl, Florian ; Psomopoulos, Fotis ; Coppens, Frederik ; Price, Gareth R ; Cuccuru, Gianmauro ; Corguillé, Gildas Le ; Von Kuster, Greg ; Akbulut, Gulsum Gudukbay ; Rasche, Helena ; Hotz, Hans-Rudolf ; Eguinoa, Ignacio ; Makunin, Igor ; Ranawaka, Isuru J ; Taylor, James P ; Joshi, Jayadev ; Hillman-Jackson, Jennifer ; Chilton, John M ; Kamali, Kaivan ; Suderman, Keith ; Poterlowicz, Krzysztof ; Yvan, Le Bras ; Lopez-Delisle, Lucille ; Sargent, Luke ; Bassetti, Madeline E ; Tangaro, Marco Antonio ; van den Beek, Marius ; Čech, Martin ; Bernt, Matthias ; Fahrner, Matthias ; Tekman, Mehmet ; Föll, Melanie C ; Crusoe, Michael R ; Roncoroni, Miguel ; Kucher, Natalie ; Coraor, Nate ; Stoler, Nicholas ; Rhodes, Nick ; Soranzo, Nicola ; Pinter, Niko ; Goonasekera, Nuwan A ; Moreno, Pablo A ; Videm, Pavankumar ; Melanie, Petera ; Mandreoli, Pietro ; Jagtap, Pratik D ; Gu, Qiang ; Weber, Ralf J M ; Lazarus, Ross ; Vorderman, Ruben H P ; Hiltemann, Saskia ; Golitsynskiy, Sergey ; Garg, Shilpa ; Bray, Simon A ; Gladman, Simon L ; Leo, Simone ; Mehta, Subina P ; Griffin, Timothy J ; Jalili, Vahid ; Yves, Vandenbrouck ; Wen, Victor ; Nagampalli, Vijay K ; Bacon, Wendi A ; de Koning, Willem ; Maier, Wolfgang ; Briggs, Peter J

Nucleic acids research, 2022-07, Vol.50 (W1), p.W345-W351 [Periódico revisado por pares]

England: Oxford University Press

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2
Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series
Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series
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Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series

Fages, Antoine ; Hanghøj, Kristian ; Khan, Naveed ; Gaunitz, Charleen ; Seguin-Orlando, Andaine ; Leonardi, Michela ; McCrory Constantz, Christian ; Gamba, Cristina ; Al-Rasheid, Khaled A.S. ; Allentoft, Morten ; Anthony, David ; Baimukhanov, Nurbol ; Barrett, James H. ; Bayarsaikhan, Jamsranjav ; Benecke, Norbert ; Bernáldez-Sánchez, Eloísa ; Berrocal-Rangel, Luis ; Boldgiv, Bazartseren ; Brem, Gottfried ; Brown, Dorcas ; Burger, Joachim ; Crubézy, Eric ; Daugnora, Linas ; Davoudi, Hossein ; de Barros Damgaard, Peter ; de los Ángeles de Chorro y de Villa-Ceballos, María ; Deschler-Erb, Sabine ; Detry, Cleia ; Dill, Nadine ; do Mar Oom, Maria ; Dohr, Anna ; Ellingvåg, Sturla ; Erdenebaatar, Diimaajav ; Fathi, Homa ; Fernández-Rodríguez, Carlos ; García-Viñas, Esteban ; Germonpré, Mietje ; Granado, José D. ; Hallsson, Jón H. ; Hemmer, Helmut ; Hofreiter, Michael ; Kasparov, Aleksei ; Khasanov, Mutalib ; Khazaeli, Roya ; Kosintsev, Pavel ; Kubatbek, Tabaldiev ; Kuderna, Lukas ; Laleh, Haeedeh ; Lhuillier, Johanna ; Logvin, Andrey ; Lõugas, Lembi ; Ludwig, Arne ; Marques-Bonet, Tomas ; Matoso Silva, Raquel ; Merz, Victor ; Miller, Bryan K. ; Monchalov, Oleg ; Morales, Arturo ; Nistelberger, Heidi ; Onar, Vedat ; Pálsdóttir, Albína H. ; Pitulko, Vladimir ; Pitskhelauri, Konstantin ; Pruvost, Mélanie ; Rajic Sikanjic, Petra ; Rapan Papeša, Anita ; Roslyakova, Natalia ; Sardari, Alireza ; Sauer, Eberhard ; Schafberg, Renate ; Scheu, Amelie ; Schibler, Jörg ; Schlumbaum, Angela ; Shapiro, Beth ; Sheikhi Seno, Shiva ; Shevnina, Irina ; Southon, John ; Star, Bastiaan ; Sykes, Naomi ; Teegen, Wolf-Rüdiger ; Trbojević Vukičević, Tajana ; Trixl, Simon ; Tumen, Dashzeveg ; Undrakhbold, Sainbileg ; Usmanova, Emma ; Vahdati, Ali ; Valenzuela-Lamas, Silvia ; Viegas, Catarina ; Wallner, Barbara ; Weinstock, Jaco ; Zaibert, Victor ; Clavel, Benoit ; Lepetz, Sébastien ; Mashkour, Marjan ; Helgason, Agnar ; Stefánsson, Kári ; Willerslev, Eske ; Outram, Alan K. ; Librado, Pablo ; Orlando, Ludovic

Cell, 2019-05, Vol.177 (6), p.1419-1435.e31 [Periódico revisado por pares]

United States: Elsevier Inc

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3
A critical spotlight on the paradigms of FFPE-DNA sequencing
A critical spotlight on the paradigms of FFPE-DNA sequencing
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A critical spotlight on the paradigms of FFPE-DNA sequencing

Steiert, Tim A ; Parra, Genís ; Gut, Marta ; Arnold, Norbert ; Trotta, Jean-Rémi ; Tonda, Raúl ; Moussy, Alice ; Gerber, Zuzana ; Abuja, Peter M ; Zatloukal, Kurt ; Röcken, Christoph ; Folseraas, Trine ; Grimsrud, Marit M ; Vogel, Arndt ; Goeppert, Benjamin ; Roessler, Stephanie ; Hinz, Sebastian ; Schafmayer, Clemens ; Rosenstiel, Philip ; Deleuze, Jean-François ; Gut, Ivo G ; Franke, Andre ; Forster, Michael

Nucleic acids research, 2023-08, Vol.51 (14), p.7143-7162 [Periódico revisado por pares]

England: Oxford University Press

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4
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles
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JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

Rauluseviciute, Ieva ; Riudavets-Puig, Rafael ; Blanc-Mathieu, Romain ; Castro-Mondragon, Jaime A ; Ferenc, Katalin ; Kumar, Vipin ; Lemma, Roza Berhanu ; Lucas, Jérémy ; Chèneby, Jeanne ; Baranasic, Damir ; Khan, Aziz ; Fornes, Oriol ; Gundersen, Sveinung ; Johansen, Morten ; Hovig, Eivind ; Lenhard, Boris ; Sandelin, Albin ; Wasserman, Wyeth W ; Parcy, François ; Mathelier, Anthony

Nucleic acids research, 2024-01, Vol.52 (D1), p.D174-D182 [Periódico revisado por pares]

England: Oxford University Press

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5
Silencing of STE20‐type kinase MST3 in mice with antisense oligonucleotide treatment ameliorates diet‐induced nonalcoholic fatty liver disease
Silencing of STE20‐type kinase MST3 in mice with antisense oligonucleotide treatment ameliorates diet‐induced nonalcoholic fatty liver disease
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Silencing of STE20‐type kinase MST3 in mice with antisense oligonucleotide treatment ameliorates diet‐induced nonalcoholic fatty liver disease

Caputo, Mara ; Kurhe, Yeshwant ; Kumari, Sima ; Cansby, Emmelie ; Amrutkar, Manoj ; Scandalis, Eli ; Booten, Sheri L. ; Ståhlman, Marcus ; Borén, Jan ; Marschall, Hanns‐Ulrich ; Aghajan, Mariam ; Mahlapuu, Margit

The FASEB journal, 2021-05, Vol.35 (5), p.e21567-n/a [Periódico revisado por pares]

United States

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6
A map of direct TF-DNA interactions in the human genome
A map of direct TF-DNA interactions in the human genome
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A map of direct TF-DNA interactions in the human genome

Gheorghe, Marius ; Sandve, Geir Kjetil ; Khan, Aziz ; Chèneby, Jeanne ; Ballester, Benoit ; Mathelier, Anthony

Nucleic acids research, 2019-02, Vol.47 (4), p.e21-e21 [Periódico revisado por pares]

England: Oxford University Press

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7
Waves of sumoylation support transcription dynamics during adipocyte differentiation
Waves of sumoylation support transcription dynamics during adipocyte differentiation
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Waves of sumoylation support transcription dynamics during adipocyte differentiation

Zhao, Xu ; Hendriks, Ivo A ; Le Gras, Stéphanie ; Ye, Tao ; Ramos-Alonso, Lucía ; Nguéa P, Aurélie ; Lien, Guro Flor ; Ghasemi, Fatemeh ; Klungland, Arne ; Jost, Bernard ; Enserink, Jorrit M ; Nielsen, Michael L ; Chymkowitch, Pierre

Nucleic acids research, 2022-02, Vol.50 (3), p.1351-1369 [Periódico revisado por pares]

England: Oxford University Press

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8
Rapid Divergence of Genome Architectures Following the Origin of an Ectomycorrhizal Symbiosis in the Genus Amanita
Rapid Divergence of Genome Architectures Following the Origin of an Ectomycorrhizal Symbiosis in the Genus Amanita
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Rapid Divergence of Genome Architectures Following the Origin of an Ectomycorrhizal Symbiosis in the Genus Amanita

Hess, Jaqueline ; Skrede, Inger ; Chaib De Mares, Maryam ; Hainaut, Matthieu ; Henrissat, Bernard ; Pringle, Anne Gojobori, Jun

Molecular biology and evolution, 2018-11, Vol.35 (11), p.2786-2804 [Periódico revisado por pares]

United States: Oxford

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9
The methyltransferase METTL9 mediates pervasive 1-methylhistidine modification in mammalian proteomes
The methyltransferase METTL9 mediates pervasive 1-methylhistidine modification in mammalian proteomes
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The methyltransferase METTL9 mediates pervasive 1-methylhistidine modification in mammalian proteomes

Davydova, Erna ; Shimazu, Tadahiro ; Schuhmacher, Maren Kirstin ; Jakobsson, Magnus E ; Willemen, Hanneke L D M ; Liu, Tongri ; Moen, Anders ; Ho, Angela Y Y ; Małecki, Jędrzej ; Schroer, Lisa ; Pinto, Rita ; Suzuki, Takehiro ; Grønsberg, Ida A ; Sohtome, Yoshihiro ; Akakabe, Mai ; Weirich, Sara ; Kikuchi, Masaki ; Olsen, Jesper V ; Dohmae, Naoshi ; Umehara, Takashi ; Sodeoka, Mikiko ; Siino, Valentina ; McDonough, Michael A ; Eijkelkamp, Niels ; Schofield, Christopher J ; Jeltsch, Albert ; Shinkai, Yoichi ; Falnes, Pål Ø

Nature communications, 2021-02, Vol.12 (1), p.891-891, Article 891 [Periódico revisado por pares]

England: Nature Publishing Group

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10
SynergyFinder 3.0: an interactive analysis and consensus interpretation of multi-drug synergies across multiple samples
SynergyFinder 3.0: an interactive analysis and consensus interpretation of multi-drug synergies across multiple samples
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SynergyFinder 3.0: an interactive analysis and consensus interpretation of multi-drug synergies across multiple samples

Ianevski, Aleksandr ; Giri, Anil K ; Aittokallio, Tero

Nucleic acids research, 2022-07, Vol.50 (W1), p.W739-W743 [Periódico revisado por pares]

England: Oxford University Press

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