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1
Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites
Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites
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Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites

Ribeiro, António J M ; Holliday, Gemma L ; Furnham, Nicholas ; Tyzack, Jonathan D ; Ferris, Katherine ; Thornton, Janet M

Nucleic acids research, 2018-01, Vol.46 (D1), p.D618-D623 [Periódico revisado por pares]

England: Oxford University Press

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2
Screening for genes that accelerate the epigenetic aging clock in humans reveals a role for the H3K36 methyltransferase NSD1
Screening for genes that accelerate the epigenetic aging clock in humans reveals a role for the H3K36 methyltransferase NSD1
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Screening for genes that accelerate the epigenetic aging clock in humans reveals a role for the H3K36 methyltransferase NSD1

Martin-Herranz, Daniel E ; Aref-Eshghi, Erfan ; Bonder, Marc Jan ; Stubbs, Thomas M ; Choufani, Sanaa ; Weksberg, Rosanna ; Stegle, Oliver ; Sadikovic, Bekim ; Reik, Wolf ; Thornton, Janet M

Genome Biology, 2019-08, Vol.20 (1), p.146-146, Article 146 [Periódico revisado por pares]

England: BioMed Central

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3
The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes
The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes
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The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes

Furnham, Nicholas ; Holliday, Gemma L ; de Beer, Tjaart A P ; Jacobsen, Julius O B ; Pearson, William R ; Thornton, Janet M

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D485-D489 [Periódico revisado por pares]

England: Oxford University Press

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4
Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure
Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure
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Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure

Capra, John A ; Laskowski, Roman A ; Thornton, Janet M ; Singh, Mona ; Funkhouser, Thomas A Lengauer, Thomas

PLoS computational biology, 2009-12, Vol.5 (12), p.e1000585 [Periódico revisado por pares]

United States: Public Library of Science

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5
VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations
VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations
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VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations

Stephenson, James D ; Laskowski, Roman A ; Nightingale, Andrew ; Hurles, Matthew E ; Thornton, Janet M Elofsson, Arne

Bioinformatics, 2019-11, Vol.35 (22), p.4854-4856 [Periódico revisado por pares]

England: Oxford University Press

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6
PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure
PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure
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PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure

Pellegrini-Calace, Marialuisa ; Maiwald, Tim ; Thornton, Janet M Lengauer, Thomas

PLoS computational biology, 2009-07, Vol.5 (7), p.e1000440-e1000440 [Periódico revisado por pares]

United States: Public Library of Science

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7
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures
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New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures

Sillitoe, Ian ; Cuff, Alison L ; Dessailly, Benoit H ; Dawson, Natalie L ; Furnham, Nicholas ; Lee, David ; Lees, Jonathan G ; Lewis, Tony E ; Studer, Romain A ; Rentzsch, Robert ; Yeats, Corin ; Thornton, Janet M ; Orengo, Christine A

Nucleic acids research, 2013-01, Vol.41 (Database issue), p.D490-D498 [Periódico revisado por pares]

England: Oxford University Press

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8
Using the drug-protein interactome to identify anti-ageing compounds for humans
Using the drug-protein interactome to identify anti-ageing compounds for humans
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Using the drug-protein interactome to identify anti-ageing compounds for humans

Fuentealba, Matías ; Dönertaş, Handan Melike ; Williams, Rhianna ; Labbadia, Johnathan ; Thornton, Janet M ; Partridge, Linda Iakoucheva, Lilia M.

PLoS computational biology, 2019-01, Vol.15 (1), p.e1006639-e1006639 [Periódico revisado por pares]

United States: Public Library of Science

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9
GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs
GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs
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GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs

Santana, Charles A ; Izidoro, Sandro C ; de Melo-Minardi, Raquel C ; Tyzack, Jonathan D ; Ribeiro, António J M ; Pires, Douglas E V ; Thornton, Janet M ; de A. Silveira, Sabrina

Nucleic acids research, 2022-07, Vol.50 (W1), p.W392-W397 [Periódico revisado por pares]

England: Oxford University Press

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10
Reaction Decoder Tool (RDT): extracting features from chemical reactions
Reaction Decoder Tool (RDT): extracting features from chemical reactions
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Reaction Decoder Tool (RDT): extracting features from chemical reactions

Rahman, Syed Asad ; Torrance, Gilliean ; Baldacci, Lorenzo ; Martínez Cuesta, Sergio ; Fenninger, Franz ; Gopal, Nimish ; Choudhary, Saket ; May, John W ; Holliday, Gemma L ; Steinbeck, Christoph ; Thornton, Janet M

Bioinformatics, 2016-07, Vol.32 (13), p.2065-2066 [Periódico revisado por pares]

England: Oxford University Press

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