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Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure
Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure
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Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure

Capra, John A ; Laskowski, Roman A ; Thornton, Janet M ; Singh, Mona ; Funkhouser, Thomas A Lengauer, Thomas

PLoS computational biology, 2009-12, Vol.5 (12), p.e1000585 [Periódico revisado por pares]

United States: Public Library of Science

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2
PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure
PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure
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PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure

Pellegrini-Calace, Marialuisa ; Maiwald, Tim ; Thornton, Janet M Lengauer, Thomas

PLoS computational biology, 2009-07, Vol.5 (7), p.e1000440-e1000440 [Periódico revisado por pares]

United States: Public Library of Science

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3
An automated protocol for modelling peptide substrates to proteases
An automated protocol for modelling peptide substrates to proteases
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An automated protocol for modelling peptide substrates to proteases

Ochoa, Rodrigo ; Magnitov, Mikhail ; Laskowski, Roman A ; Cossio, Pilar ; Thornton, Janet M

BMC bioinformatics, 2020-12, Vol.21 (1), p.586-586, Article 586 [Periódico revisado por pares]

England: BioMed Central Ltd

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4
ProFunc: a server for predicting protein function from 3D structure
ProFunc: a server for predicting protein function from 3D structure
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ProFunc: a server for predicting protein function from 3D structure

Laskowski, Roman A. ; Watson, James D. ; Thornton, Janet M.

Nucleic acids research, 2005-07, Vol.33 (suppl-2), p.W89-W93 [Periódico revisado por pares]

England: Oxford University Press

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5
Diversity of protein-protein interactions
Diversity of protein-protein interactions
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Diversity of protein-protein interactions

Nooren, Irene M.A. ; Thornton, Janet M.

The EMBO journal, 2003-07, Vol.22 (14), p.3486-3492 [Periódico revisado por pares]

Chichester, UK: John Wiley & Sons, Ltd

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6
PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids
PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids
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PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids

Laskowski, Roman A. ; Chistyakov, Victor V. ; Thornton, Janet M.

Nucleic acids research, 2005-01, Vol.33 (suppl-1), p.D266-D268 [Periódico revisado por pares]

England: Oxford University Press

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7
An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis
An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis
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An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis

Barker, Jonathan A. ; Thornton, Janet M.

Bioinformatics, 2003-09, Vol.19 (13), p.1644-1649 [Periódico revisado por pares]

Oxford: Oxford University Press

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8
Large-scale determination of sequence, structure, and function relationships in cytosolic glutathione transferases across the biosphere
Large-scale determination of sequence, structure, and function relationships in cytosolic glutathione transferases across the biosphere
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Large-scale determination of sequence, structure, and function relationships in cytosolic glutathione transferases across the biosphere

Mashiyama, Susan T ; Malabanan, M Merced ; Akiva, Eyal ; Bhosle, Rahul ; Branch, Megan C ; Hillerich, Brandan ; Jagessar, Kevin ; Kim, Jungwook ; Patskovsky, Yury ; Seidel, Ronald D ; Stead, Mark ; Toro, Rafael ; Vetting, Matthew W ; Almo, Steven C ; Armstrong, Richard N ; Babbitt, Patricia C Thornton, Janet M.

PLoS biology, 2014-04, Vol.12 (4), p.e1001843-e1001843 [Periódico revisado por pares]

United States: Public Library of Science

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9
Protein-RNA interactions: a structural analysis
Protein-RNA interactions: a structural analysis
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Protein-RNA interactions: a structural analysis

Jones, S ; Daley, D T ; Luscombe, N M ; Berman, H M ; Thornton, J M

Nucleic acids research, 2001-02, Vol.29 (4), p.943-954 [Periódico revisado por pares]

England: Oxford Publishing Limited (England)

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10
Identifying DNA-binding proteins using structural motifs and the electrostatic potential
Identifying DNA-binding proteins using structural motifs and the electrostatic potential
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Identifying DNA-binding proteins using structural motifs and the electrostatic potential

Shanahan, Hugh P. ; Garcia, Mario A. ; Jones, Susan ; Thornton, Janet M.

Nucleic acids research, 2004-01, Vol.32 (16), p.4732-4741 [Periódico revisado por pares]

England: Oxford University Press

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