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Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites
Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites
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Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites

Ribeiro, António J M ; Holliday, Gemma L ; Furnham, Nicholas ; Tyzack, Jonathan D ; Ferris, Katherine ; Thornton, Janet M

Nucleic acids research, 2018-01, Vol.46 (D1), p.D618-D623 [Periódico revisado por pares]

England: Oxford University Press

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2
The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes
The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes
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The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes

Furnham, Nicholas ; Holliday, Gemma L ; de Beer, Tjaart A P ; Jacobsen, Julius O B ; Pearson, William R ; Thornton, Janet M

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D485-D489 [Periódico revisado por pares]

England: Oxford University Press

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3
Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure
Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure
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Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure

Capra, John A ; Laskowski, Roman A ; Thornton, Janet M ; Singh, Mona ; Funkhouser, Thomas A Lengauer, Thomas

PLoS computational biology, 2009-12, Vol.5 (12), p.e1000585 [Periódico revisado por pares]

United States: Public Library of Science

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4
Author Correction: Temporal changes in the gene expression heterogeneity during brain development and aging
Author Correction: Temporal changes in the gene expression heterogeneity during brain development and aging
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Author Correction: Temporal changes in the gene expression heterogeneity during brain development and aging

Işıldak, Ulaş ; Somel, Mehmet ; Thornton, Janet M ; Dönertaş, Handan Melike

Scientific reports, 2023-06, Vol.13 (1), p.10157-10157, Article 10157 [Periódico revisado por pares]

England: Nature Publishing Group

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5
PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure
PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure
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PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure

Pellegrini-Calace, Marialuisa ; Maiwald, Tim ; Thornton, Janet M Lengauer, Thomas

PLoS computational biology, 2009-07, Vol.5 (7), p.e1000440-e1000440 [Periódico revisado por pares]

United States: Public Library of Science

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6
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures
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New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures

Sillitoe, Ian ; Cuff, Alison L ; Dessailly, Benoit H ; Dawson, Natalie L ; Furnham, Nicholas ; Lee, David ; Lees, Jonathan G ; Lewis, Tony E ; Studer, Romain A ; Rentzsch, Robert ; Yeats, Corin ; Thornton, Janet M ; Orengo, Christine A

Nucleic acids research, 2013-01, Vol.41 (Database issue), p.D490-D498 [Periódico revisado por pares]

England: Oxford University Press

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7
Functional conservation in genes and pathways linking ageing and immunity
Functional conservation in genes and pathways linking ageing and immunity
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Functional conservation in genes and pathways linking ageing and immunity

Fabian, Daniel K ; Fuentealba, Matías ; Dönertaş, Handan Melike ; Partridge, Linda ; Thornton, Janet M

Immunity & ageing, 2021-05, Vol.18 (1), p.23-23, Article 23 [Periódico revisado por pares]

England: BioMed Central Ltd

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8
Using the drug-protein interactome to identify anti-ageing compounds for humans
Using the drug-protein interactome to identify anti-ageing compounds for humans
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Using the drug-protein interactome to identify anti-ageing compounds for humans

Fuentealba, Matías ; Dönertaş, Handan Melike ; Williams, Rhianna ; Labbadia, Johnathan ; Thornton, Janet M ; Partridge, Linda Iakoucheva, Lilia M.

PLoS computational biology, 2019-01, Vol.15 (1), p.e1006639-e1006639 [Periódico revisado por pares]

United States: Public Library of Science

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9
GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs
GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs
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GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs

Santana, Charles A ; Izidoro, Sandro C ; de Melo-Minardi, Raquel C ; Tyzack, Jonathan D ; Ribeiro, António J M ; Pires, Douglas E V ; Thornton, Janet M ; de A. Silveira, Sabrina

Nucleic acids research, 2022-07, Vol.50 (W1), p.W392-W397 [Periódico revisado por pares]

England: Oxford University Press

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10
An automated protocol for modelling peptide substrates to proteases
An automated protocol for modelling peptide substrates to proteases
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An automated protocol for modelling peptide substrates to proteases

Ochoa, Rodrigo ; Magnitov, Mikhail ; Laskowski, Roman A ; Cossio, Pilar ; Thornton, Janet M

BMC bioinformatics, 2020-12, Vol.21 (1), p.586-20, Article 586 [Periódico revisado por pares]

England: BioMed Central Ltd

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