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RSAT 2022: regulatory sequence analysis tools
RSAT 2022: regulatory sequence analysis tools
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RSAT 2022: regulatory sequence analysis tools

Santana-Garcia, Walter ; Castro-Mondragon, Jaime A ; Padilla-Gálvez, Mónica ; Nguyen, Nga Thi Thuy ; Elizondo-Salas, Ana ; Ksouri, Najla ; Gerbes, François ; Thieffry, Denis ; Vincens, Pierre ; Contreras-Moreira, Bruno ; van Helden, Jacques ; Thomas-Chollier, Morgane ; Medina-Rivera, Alejandra

Nucleic acids research, 2022-07, Vol.50 (W1), p.W670-W676 [Periódico revisado por pares]

England: Oxford University Press

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Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
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Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases

Tørresen, Ole K ; Star, Bastiaan ; Mier, Pablo ; Andrade-Navarro, Miguel A ; Bateman, Alex ; Jarnot, Patryk ; Gruca, Aleksandra ; Grynberg, Marcin ; Kajava, Andrey V ; Promponas, Vasilis J ; Anisimova, Maria ; Jakobsen, Kjetill S ; Linke, Dirk

Nucleic acids research, 2019-12, Vol.47 (21), p.10994-11006 [Periódico revisado por pares]

England: Oxford University Press

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3
ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments
ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments
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ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments

Chèneby, Jeanne ; Gheorghe, Marius ; Artufel, Marie ; Mathelier, Anthony ; Ballester, Benoit

Nucleic acids research, 2018-01, Vol.46 (D1), p.D267-D275 [Periódico revisado por pares]

England: Oxford University Press

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4
A map of direct TF-DNA interactions in the human genome
A map of direct TF-DNA interactions in the human genome
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A map of direct TF-DNA interactions in the human genome

Gheorghe, Marius ; Sandve, Geir Kjetil ; Khan, Aziz ; Chèneby, Jeanne ; Ballester, Benoit ; Mathelier, Anthony

Nucleic acids research, 2019-02, Vol.47 (4), p.e21-e21 [Periódico revisado por pares]

England: Oxford University Press

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5
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
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Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

Mak, Sarah Siu Tze ; Gopalakrishnan, Shyam ; Carøe, Christian ; Geng, Chunyu ; Liu, Shanlin ; Sinding, Mikkel-Holger S ; Kuderna, Lukas F K ; Zhang, Wenwei ; Fu, Shujin ; Vieira, Filipe G ; Germonpré, Mietje ; Bocherens, Hervé ; Fedorov, Sergey ; Petersen, Bent ; Sicheritz-Pontén, Thomas ; Marques-Bonet, Tomas ; Zhang, Guojie ; Jiang, Hui ; Gilbert, M Thomas P

Gigascience, 2017-08, Vol.6 (8), p.1-13 [Periódico revisado por pares]

United States: Oxford University Press

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6
Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages
Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages
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Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages

de Been, Mark ; Lanza, Val F ; de Toro, María ; Scharringa, Jelle ; Dohmen, Wietske ; Du, Yu ; Hu, Juan ; Lei, Ying ; Li, Ning ; Tooming-Klunderud, Ave ; Heederik, Dick J J ; Fluit, Ad C ; Bonten, Marc J M ; Willems, Rob J L ; de la Cruz, Fernando ; van Schaik, Willem Richardson, Paul M.

PLoS genetics, 2014-12, Vol.10 (12), p.e1004776-e1004776 [Periódico revisado por pares]

United States: Public Library of Science (PLoS)

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7
Genomic evidence of speciation reversal in ravens
Genomic evidence of speciation reversal in ravens
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Genomic evidence of speciation reversal in ravens

Kearns, Anna M ; Restani, Marco ; Szabo, Ildiko ; Schrøder-Nielsen, Audun ; Kim, Jin Ah ; Richardson, Hayley M ; Marzluff, John M ; Fleischer, Robert C ; Johnsen, Arild ; Omland, Kevin E

Nature communications, 2018-03, Vol.9 (1), p.906-13, Article 906 [Periódico revisado por pares]

England: Nature Publishing Group

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8
Unidentifiable by morphology: DNA barcoding of plant material in local markets in Iran
Unidentifiable by morphology: DNA barcoding of plant material in local markets in Iran
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Unidentifiable by morphology: DNA barcoding of plant material in local markets in Iran

Ghorbani, Abdolbaset ; Saeedi, Yousef ; de Boer, Hugo J Bussmann, Rainer

PloS one, 2017-04, Vol.12 (4), p.e0175722-e0175722 [Periódico revisado por pares]

United States: Public Library of Science

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9
GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways
GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways
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GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways

López-Isac, Elena ; Acosta-Herrera, Marialbert ; Kerick, Martin ; Assassi, Shervin ; Satpathy, Ansuman T ; Granja, Jeffrey ; Mumbach, Maxwell R ; Beretta, Lorenzo ; Simeón, Carmen P ; Carreira, Patricia ; Ortego-Centeno, Norberto ; Castellvi, Ivan ; Bossini-Castillo, Lara ; Carmona, F David ; Orozco, Gisela ; Hunzelmann, Nicolas ; Distler, Jörg H W ; Franke, Andre ; Lunardi, Claudio ; Moroncini, Gianluca ; Gabrielli, Armando ; de Vries-Bouwstra, Jeska ; Wijmenga, Cisca ; Koeleman, Bobby P C ; Nordin, Annika ; Padyukov, Leonid ; Hoffmann-Vold, Anna-Maria ; Lie, Benedicte ; Proudman, Susanna ; Stevens, Wendy ; Nikpour, Mandana ; Vyse, Timothy ; Herrick, Ariane L ; Worthington, Jane ; Denton, Christopher P ; Allanore, Yannick ; Brown, Matthew A ; Radstake, Timothy R D J ; Fonseca, Carmen ; Chang, Howard Y ; Mayes, Maureen D ; Martin, Javier

Nature communications, 2019-10, Vol.10 (1), p.4955-14, Article 4955 [Periódico revisado por pares]

England: Nature Publishing Group

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10
Neuronal and glial DNA methylation and gene expression changes in early epileptogenesis
Neuronal and glial DNA methylation and gene expression changes in early epileptogenesis
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Neuronal and glial DNA methylation and gene expression changes in early epileptogenesis

Berger, Toni C ; Vigeland, Magnus D ; Hjorthaug, Hanne S ; Etholm, Lars ; Nome, Cecilie G ; Taubøll, Erik ; Heuser, Kjell ; Selmer, Kaja K Biagini, Giuseppe

PloS one, 2019, Vol.14 (12), p.e0226575-e0226575 [Periódico revisado por pares]

United States: Public Library of Science

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