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MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems
MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems
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MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems

Abby, Sophie S ; Néron, Bertrand ; Ménager, Hervé ; Touchon, Marie ; Rocha, Eduardo P C Torres, Néstor V.

PloS one, 2014-10, Vol.9 (10), p.e110726-e110726 [Periódico revisado por pares]

United States: Public Library of Science

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The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella
The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella
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The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella

Touchon, Marie ; Rocha, Eduardo P C Randau, Lennart

PloS one, 2010-06, Vol.5 (6), p.e11126-e11126 [Periódico revisado por pares]

United States: Public Library of Science

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3
Phage-plasmids promote recombination and emergence of phages and plasmids
Phage-plasmids promote recombination and emergence of phages and plasmids
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Phage-plasmids promote recombination and emergence of phages and plasmids

Pfeifer, Eugen ; Rocha, Eduardo P C

Nature communications, 2024-02, Vol.15 (1), p.1545-1545 [Periódico revisado por pares]

England: Nature Publishing Group

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4
Adaptation to novel spatially-structured environments is driven by the capsule and alters virulence-associated traits
Adaptation to novel spatially-structured environments is driven by the capsule and alters virulence-associated traits
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Adaptation to novel spatially-structured environments is driven by the capsule and alters virulence-associated traits

Nucci, Amandine ; Rocha, Eduardo P. C. ; Rendueles, Olaya

Nature communications, 2022-08, Vol.13 (1), p.4751-4751, Article 4751 [Periódico revisado por pares]

London: Nature Publishing Group

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5
Capsules and their traits shape phage susceptibility and plasmid conjugation efficiency
Capsules and their traits shape phage susceptibility and plasmid conjugation efficiency
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Capsules and their traits shape phage susceptibility and plasmid conjugation efficiency

Haudiquet, Matthieu ; Le Bris, Julie ; Nucci, Amandine ; Bonnin, Rémy A ; Domingo-Calap, Pilar ; Rocha, Eduardo P C ; Rendueles, Olaya

Nature communications, 2024-03, Vol.15 (1), p.2032-2032 [Periódico revisado por pares]

England: Nature Publishing Group

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6
Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts
Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts
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Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts

Smug, Bogna J. ; Szczepaniak, Krzysztof ; Rocha, Eduardo P. C. ; Dunin-Horkawicz, Stanislaw ; Mostowy, Rafał J.

Nature communications, 2023-11, Vol.14 (1), p.7460-7460, Article 7460 [Periódico revisado por pares]

London: Nature Publishing Group

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7
Extensive co-binding and rapid redistribution of NANOG and GATA6 during emergence of divergent lineages
Extensive co-binding and rapid redistribution of NANOG and GATA6 during emergence of divergent lineages
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Extensive co-binding and rapid redistribution of NANOG and GATA6 during emergence of divergent lineages

Thompson, Joyce J ; Lee, Daniel J ; Mitra, Apratim ; Frail, Sarah ; Dale, Ryan K ; Rocha, Pedro P

Nature communications, 2022-07, Vol.13 (1), p.4257-4257, Article 4257 [Periódico revisado por pares]

London: Nature Publishing Group

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8
Rapid evolution of the sequences and gene repertoires of secreted proteins in bacteria
Rapid evolution of the sequences and gene repertoires of secreted proteins in bacteria
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Rapid evolution of the sequences and gene repertoires of secreted proteins in bacteria

Nogueira, Teresa ; Touchon, Marie ; Rocha, Eduardo P C McCutcheon, John

PloS one, 2012-11, Vol.7 (11), p.e49403-e49403 [Periódico revisado por pares]

United States: Public Library of Science

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9
Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids
Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids
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Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids

Redondo-Salvo, Santiago ; Fernández-López, Raúl ; Ruiz, Raúl ; Vielva, Luis ; de Toro, María ; Rocha, Eduardo P. C. ; Garcillán-Barcia, M. Pilar ; de la Cruz, Fernando

Nature communications, 2020-07, Vol.11 (1), p.3602-3602, Article 3602 [Periódico revisado por pares]

London: Nature Publishing Group

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10
The chromosomal organization of horizontal gene transfer in bacteria
The chromosomal organization of horizontal gene transfer in bacteria
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The chromosomal organization of horizontal gene transfer in bacteria

Oliveira, Pedro H ; Touchon, Marie ; Cury, Jean ; Rocha, Eduardo P C

Nature communications, 2017-10, Vol.8 (1), p.841-11, Article 841 [Periódico revisado por pares]

England: Nature Publishing Group

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