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Material Type: Artigo
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 updateAfgan, Enis ; Nekrutenko, Anton ; Grüning, Bjórn A ; Blankenberg, Daniel ; Goecks, Jeremy ; Schatz, Michael C ; Ostrovsky, Alexander E ; Mahmoud, Alexandru ; Lonie, Andrew J ; Syme, Anna ; Bretaudeau, Anthony ; Kumar, Anup ; Eschenlauer, Arthur C ; DeSanto, Assunta D ; Guerler, Aysam ; Serrano-Solano, Beatriz ; Batut, Bérénice ; Grüning, Björn A ; Langhorst, Bradley W ; Carr, Bridget ; Raubenolt, Bryan A ; Hyde, Cameron J ; Bromhead, Catherine J ; Barnett, Christopher B ; Royaux, Coline ; Gallardo, Cristóbal ; Fornika, Daniel J ; Baker, Dannon ; Bouvier, Dave ; Clements, Dave ; de Lima Morais, David A ; Tabernero, David Lopez ; Lariviere, Delphine ; Nasr, Engy ; Zambelli, Federico ; Heyl, Florian ; Psomopoulos, Fotis ; Coppens, Frederik ; Price, Gareth R ; Cuccuru, Gianmauro ; Corguillé, Gildas Le ; Von Kuster, Greg ; Akbulut, Gulsum Gudukbay ; Rasche, Helena ; Hotz, Hans-Rudolf ; Eguinoa, Ignacio ; Makunin, Igor ; Ranawaka, Isuru J ; Taylor, James P ; Joshi, Jayadev ; Hillman-Jackson, Jennifer ; Chilton, John M ; Kamali, Kaivan ; Suderman, Keith ; Poterlowicz, Krzysztof ; Yvan, Le Bras ; Lopez-Delisle, Lucille ; Sargent, Luke ; Bassetti, Madeline E ; Tangaro, Marco Antonio ; van den Beek, Marius ; Čech, Martin ; Bernt, Matthias ; Fahrner, Matthias ; Tekman, Mehmet ; Föll, Melanie C ; Crusoe, Michael R ; Roncoroni, Miguel ; Kucher, Natalie ; Coraor, Nate ; Stoler, Nicholas ; Rhodes, Nick ; Soranzo, Nicola ; Pinter, Niko ; Goonasekera, Nuwan A ; Moreno, Pablo A ; Videm, Pavankumar ; Melanie, Petera ; Mandreoli, Pietro ; Jagtap, Pratik D ; Gu, Qiang ; Weber, Ralf J M ; Lazarus, Ross ; Vorderman, Ruben H P ; Hiltemann, Saskia ; Golitsynskiy, Sergey ; Garg, Shilpa ; Bray, Simon A ; Gladman, Simon L ; Leo, Simone ; Mehta, Subina P ; Griffin, Timothy J ; Jalili, Vahid ; Yves, Vandenbrouck ; Wen, Victor ; Nagampalli, Vijay K ; Bacon, Wendi A ; de Koning, Willem ; Maier, Wolfgang ; Briggs, Peter JNucleic acids research, 2022-07, Vol.50 (W1), p.W345-W351 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Fast hierarchical Bayesian analysis of population structureTonkin-Hill, Gerry ; Lees, John A ; Bentley, Stephen D ; Frost, Simon D W ; Corander, JukkaNucleic acids research, 2019-06, Vol.47 (11), p.5539-5549 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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GRAND: a database of gene regulatory network models across human conditionsBen Guebila, Marouen ; Lopes-Ramos, Camila M ; Weighill, Deborah ; Sonawane, Abhijeet Rajendra ; Burkholz, Rebekka ; Shamsaei, Behrouz ; Platig, John ; Glass, Kimberly ; Kuijjer, Marieke L ; Quackenbush, JohnNucleic acids research, 2022-01, Vol.50 (D1), p.D610-D621 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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A map of direct TF-DNA interactions in the human genomeGheorghe, Marius ; Sandve, Geir Kjetil ; Khan, Aziz ; Chèneby, Jeanne ; Ballester, Benoit ; Mathelier, AnthonyNucleic acids research, 2019-02, Vol.47 (4), p.e21-e21 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profilesRauluseviciute, Ieva ; Riudavets-Puig, Rafael ; Blanc-Mathieu, Romain ; Castro-Mondragon, Jaime A ; Ferenc, Katalin ; Kumar, Vipin ; Lemma, Roza Berhanu ; Lucas, Jérémy ; Chèneby, Jeanne ; Baranasic, Damir ; Khan, Aziz ; Fornes, Oriol ; Gundersen, Sveinung ; Johansen, Morten ; Hovig, Eivind ; Lenhard, Boris ; Sandelin, Albin ; Wasserman, Wyeth W ; Parcy, François ; Mathelier, AnthonyNucleic acids research, 2024-01, Vol.52 (D1), p.D174-D182 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experimentsChèneby, Jeanne ; Gheorghe, Marius ; Artufel, Marie ; Mathelier, Anthony ; Ballester, BenoitNucleic acids research, 2018-01, Vol.46 (D1), p.D267-D275 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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The human methyltransferase ZCCHC4 catalyses N6-methyladenosine modification of 28S ribosomal RNAPinto, Rita ; Vågbø, Cathrine B ; Jakobsson, Magnus E ; Kim, Yeji ; Baltissen, Marijke P ; O’Donohue, Marie-Françoise ; Guzmán, Ulises H ; Małecki, Jędrzej M ; Wu, Jie ; Kirpekar, Finn ; Olsen, Jesper V ; Gleizes, Pierre-Emmanuel ; Vermeulen, Michiel ; Leidel, Sebastian A ; Slupphaug, Geir ; Falnes, Pål ØNucleic acids research, 2020-01, Vol.48 (2), p.830-846 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammalsLizio, Marina ; Harshbarger, Jayson ; Abugessaisa, Imad ; Noguchi, Shuei ; Kondo, Atsushi ; Severin, Jessica ; Mungall, Chris ; Arenillas, David ; Mathelier, Anthony ; Medvedeva, Yulia A ; Lennartsson, Andreas ; Drabløs, Finn ; Ramilowski, Jordan A ; Rackham, Owen ; Gough, Julian ; Andersson, Robin ; Sandelin, Albin ; Ienasescu, Hans ; Ono, Hiromasa ; Bono, Hidemasa ; Hayashizaki, Yoshihide ; Carninci, Piero ; Forrest, Alistair R R ; Kasukawa, Takeya ; Kawaji, HideyaNucleic acids research, 2017-01, Vol.45 (D1), p.D737-D743 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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The SysteMHC Atlas projectShao, Wenguang ; Pedrioli, Patrick G A ; Wolski, Witold ; Scurtescu, Cristian ; Schmid, Emanuel ; Vizcaíno, Juan A ; Courcelles, Mathieu ; Schuster, Heiko ; Kowalewski, Daniel ; Marino, Fabio ; Arlehamn, Cecilia S L ; Vaughan, Kerrie ; Peters, Bjoern ; Sette, Alessandro ; Ottenhoff, Tom H M ; Meijgaarden, Krista E ; Nieuwenhuizen, Natalie ; Kaufmann, Stefan H E ; Schlapbach, Ralph ; Castle, John C ; Nesvizhskii, Alexey I ; Nielsen, Morten ; Deutsch, Eric W ; Campbell, David S ; Moritz, Robert L ; Zubarev, Roman A ; Ytterberg, Anders Jimmy ; Purcell, Anthony W ; Marcilla, Miguel ; Paradela, Alberto ; Wang, Qi ; Costello, Catherine E ; Ternette, Nicola ; van Veelen, Peter A ; van Els, Cécile A C M ; Heck, Albert J R ; de Souza, Gustavo A ; Sollid, Ludvig M ; Admon, Arie ; Stevanovic, Stefan ; Rammensee, Hans-Georg ; Thibault, Pierre ; Perreault, Claude ; Bassani-Sternberg, Michal ; Aebersold, Ruedi ; Caron, EtienneNucleic acids research, 2018-01, Vol.46 (D1), p.D1237-D1247 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancersCastro-Mondragon, Jaime A ; Aure, Miriam Ragle ; Lingjærde, Ole Christian ; Langerød, Anita ; Martens, John W M ; Børresen-Dale, Anne-Lise ; Kristensen, Vessela N ; Mathelier, AnthonyNucleic acids research, 2022-11, Vol.50 (21), p.12131-12148 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |