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1
A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data
A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data
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A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data

Sharma, Ajeet K ; Sormanni, Pietro ; Ahmed, Nabeel ; Ciryam, Prajwal ; Friedrich, Ulrike A ; Kramer, Günter ; O'Brien, Edward P Tuller, Tamir

PLoS computational biology, 2019-05, Vol.15 (5), p.e1007070-e1007070 [Periódico revisado por pares]

United States: Public Library of Science

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2
Computational design and interpretation of single-RNA translation experiments
Computational design and interpretation of single-RNA translation experiments
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Computational design and interpretation of single-RNA translation experiments

Aguilera, Luis U ; Raymond, William ; Fox, Zachary R ; May, Michael ; Djokic, Elliot ; Morisaki, Tatsuya ; Stasevich, Timothy J ; Munsky, Brian Igoshin, Oleg A

PLoS computational biology, 2019-10, Vol.15 (10), p.e1007425-e1007425 [Periódico revisado por pares]

United States: Public Library of Science

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3
Free energy landscape of RNA binding dynamics in start codon recognition by eukaryotic ribosomal pre-initiation complex
Free energy landscape of RNA binding dynamics in start codon recognition by eukaryotic ribosomal pre-initiation complex
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Free energy landscape of RNA binding dynamics in start codon recognition by eukaryotic ribosomal pre-initiation complex

Kameda, Takeru ; Asano, Katsura ; Togashi, Yuichi Shakhnovich, Eugene I.

PLoS computational biology, 2021-06, Vol.17 (6), p.e1009068-e1009068 [Periódico revisado por pares]

United States: Public Library of Science

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4
Binding-induced folding of a natively unstructured transcription factor
Binding-induced folding of a natively unstructured transcription factor
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Binding-induced folding of a natively unstructured transcription factor

Turjanski, Adrian Gustavo ; Gutkind, J Silvio ; Best, Robert B ; Hummer, Gerhard Shakhnovich, Eugene I.

PLoS computational biology, 2008-04, Vol.4 (4), p.e1000060-e1000060 [Periódico revisado por pares]

United States: Public Library of Science

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5
Model-based translation of DNA damage signaling dynamics across cell types
Model-based translation of DNA damage signaling dynamics across cell types
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Model-based translation of DNA damage signaling dynamics across cell types

Heldring, Muriel M ; Wijaya, Lukas S ; Niemeijer, Marije ; Yang, Huan ; Lakhal, Talel ; Le Dévédec, Sylvia E ; van de Water, Bob ; Beltman, Joost B Mendes, Pedro

PLoS computational biology, 2022-07, Vol.18 (7), p.e1010264-e1010264 [Periódico revisado por pares]

San Francisco: Public Library of Science

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6
Protein charge distribution in proteomes and its impact on translation
Protein charge distribution in proteomes and its impact on translation
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Protein charge distribution in proteomes and its impact on translation

Requião, Rodrigo D ; Fernandes, Luiza ; de Souza, Henrique José Araujo ; Rossetto, Silvana ; Domitrovic, Tatiana ; Palhano, Fernando L Chen, Shi-Jie

PLoS computational biology, 2017-05, Vol.13 (5), p.e1005549-e1005549 [Periódico revisado por pares]

United States: Public Library of Science

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7
The extent of ribosome queuing in budding yeast
The extent of ribosome queuing in budding yeast
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The extent of ribosome queuing in budding yeast

Diament, Alon ; Feldman, Anna ; Schochet, Elisheva ; Kupiec, Martin ; Arava, Yoav ; Tuller, Tamir McCarthy, John

PLoS computational biology, 2018-01, Vol.14 (1), p.e1005951-e1005951 [Periódico revisado por pares]

United States: Public Library of Science

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8
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression
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Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

He, Xin ; Samee, Md Abul Hassan ; Blatti, Charles ; Sinha, Saurabh Ohler, Uwe

PLoS computational biology, 2010-09, Vol.6 (9), p.e1000935 [Periódico revisado por pares]

United States: Public Library of Science

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9
Towards a molecular basis of ubiquitin signaling: A dual-scale simulation study of ubiquitin dimers
Towards a molecular basis of ubiquitin signaling: A dual-scale simulation study of ubiquitin dimers
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Towards a molecular basis of ubiquitin signaling: A dual-scale simulation study of ubiquitin dimers

Berg, Andrej ; Kukharenko, Oleksandra ; Scheffner, Martin ; Peter, Christine Haliloglu, Turkan

PLoS computational biology, 2018-11, Vol.14 (11), p.e1006589-e1006589 [Periódico revisado por pares]

United States: Public Library of Science

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10
Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells
Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells
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Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells

Dana, Alexandra ; Tuller, Tamir Teichmann, Sarah A.

PLoS computational biology, 2012-11, Vol.8 (11), p.e1002755-e1002755 [Periódico revisado por pares]

United States: Public Library of Science

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