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miRNA activity inferred from single cell mRNA expression
miRNA activity inferred from single cell mRNA expression
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miRNA activity inferred from single cell mRNA expression

Nielsen, Morten Muhlig ; Pedersen, Jakob Skou

Scientific reports, 2021-04, Vol.11 (1), p.9170-9170, Article 9170 [Periódico revisado por pares]

England: Nature Publishing Group

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2
Molecular correlates of cisplatin-based chemotherapy response in muscle invasive bladder cancer by integrated multi-omics analysis
Molecular correlates of cisplatin-based chemotherapy response in muscle invasive bladder cancer by integrated multi-omics analysis
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Molecular correlates of cisplatin-based chemotherapy response in muscle invasive bladder cancer by integrated multi-omics analysis

Taber, Ann ; Christensen, Emil ; Lamy, Philippe ; Nordentoft, Iver ; Prip, Frederik ; Lindskrog, Sia Viborg ; Birkenkamp-Demtröder, Karin ; Okholm, Trine Line Hauge ; Knudsen, Michael ; Pedersen, Jakob Skou ; Steiniche, Torben ; Agerbæk, Mads ; Jensen, Jørgen Bjerggaard ; Dyrskjøt, Lars

Nature communications, 2020-09, Vol.11 (1), p.4858-15, Article 4858 [Periódico revisado por pares]

England: Nature Publishing Group

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3
Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue
Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue
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Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue

Hedegaard, Jakob ; Thorsen, Kasper ; Lund, Mette Katrine ; Hein, Anne-Mette K ; Hamilton-Dutoit, Stephen Jacques ; Vang, Søren ; Nordentoft, Iver ; Birkenkamp-Demtröder, Karin ; Kruhøffer, Mogens ; Hager, Henrik ; Knudsen, Bjarne ; Andersen, Claus Lindbjerg ; Sørensen, Karina Dalsgaard ; Pedersen, Jakob Skou ; Ørntoft, Torben Falck ; Dyrskjøt, Lars Zuo, Zhuang

PloS one, 2014-05, Vol.9 (5), p.e98187-e98187 [Periódico revisado por pares]

United States: Public Library of Science

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4
SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization
SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization
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SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization

Damas, Nkerorema Djodji ; Marcatti, Michela ; Côme, Christophe ; Christensen, Lise Lotte ; Nielsen, Morten Muhlig ; Baumgartner, Roland ; Gylling, Helene Maria ; Maglieri, Giulia ; Rundsten, Carsten Friis ; Seemann, Stefan E ; Rapin, Nicolas ; Thézenas, Simon ; Vang, Søren ; Ørntoft, Torben ; Andersen, Claus Lindbjerg ; Pedersen, Jakob Skou ; Lund, Anders H

Nature communications, 2016-12, Vol.7 (1), p.13875-13875, Article 13875 [Periódico revisado por pares]

England: Nature Publishing Group

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5
Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression
Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression
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Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression

Okholm, Trine Line Hauge ; Sathe, Shashank ; Park, Samuel S ; Kamstrup, Andreas Bjerregaard ; Rasmussen, Asta Mannstaedt ; Shankar, Archana ; Chua, Zong Ming ; Fristrup, Niels ; Nielsen, Morten Muhlig ; Vang, Søren ; Dyrskjøt, Lars ; Aigner, Stefan ; Damgaard, Christian Kroun ; Yeo, Gene W ; Pedersen, Jakob Skou

Genome medicine, 2020-12, Vol.12 (1), p.112-22, Article 112 [Periódico revisado por pares]

England: BioMed Central Ltd

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6
Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate
Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate
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Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate

Juul, Malene ; Bertl, Johanna ; Guo, Qianyun ; Nielsen, Morten Muhlig ; Świtnicki, Michał ; Hornshøj, Henrik ; Madsen, Tobias ; Hobolth, Asger ; Pedersen, Jakob Skou

eLife, 2017-03, Vol.6 [Periódico revisado por pares]

England: eLife Science Publications, Ltd

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7
Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis
Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis
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Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis

Thorsen, Kasper ; Schepeler, Troels ; Øster, Bodil ; Rasmussen, Mads H ; Vang, Søren ; Wang, Kai ; Hansen, Kristian Q ; Lamy, Philippe ; Pedersen, Jakob Skou ; Eller, Asger ; Mansilla, Francisco ; Laurila, Kirsti ; Wiuf, Carsten ; Laurberg, Søren ; Dyrskjøt, Lars ; Ørntoft, Torben F ; Andersen, Claus L

BMC genomics, 2011-10, Vol.12 (1), p.505-505, Article 505 [Periódico revisado por pares]

England: BioMed Central Ltd

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8
Epigenetic and transcriptomic consequences of excess X‐chromosome material in 47,XXX syndrome—A comparison with Turner syndrome and 46,XX females
Epigenetic and transcriptomic consequences of excess X‐chromosome material in 47,XXX syndrome—A comparison with Turner syndrome and 46,XX females
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Epigenetic and transcriptomic consequences of excess X‐chromosome material in 47,XXX syndrome—A comparison with Turner syndrome and 46,XX females

Nielsen, Morten Muhlig ; Trolle, Christian ; Vang, Søren ; Hornshøj, Henrik ; Skakkebæk, Anne ; Hedegaard, Jakob ; Nordentoft, Iver ; Pedersen, Jakob Skou ; Gravholt, Claus Højbjerg

American journal of medical genetics. Part C, Seminars in medical genetics, 2020-06, Vol.184 (2), p.279-293

Hoboken, USA: John Wiley & Sons, Inc

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9
Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
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Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

Pedersen, Jakob Skou ; Valen, Eivind ; Velazquez, Amhed M Vargas ; Parker, Brian J ; Rasmussen, Morten ; Lindgreen, Stinus ; Lilje, Berit ; Tobin, Desmond J ; Kelly, Theresa K ; Vang, Søren ; Andersson, Robin ; Jones, Peter A ; Hoover, Cindi A ; Tikhonov, Alexei ; Prokhortchouk, Egor ; Rubin, Edward M ; Sandelin, Albin ; Gilbert, M Thomas P ; Krogh, Anders ; Willerslev, Eske ; Orlando, Ludovic

Genome research, 2014-03, Vol.24 (3), p.454-466 [Periódico revisado por pares]

United States: Cold Spring Harbor Laboratory Press

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