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pyseer: a comprehensive tool for microbial pangenome-wide association studies
pyseer: a comprehensive tool for microbial pangenome-wide association studies
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pyseer: a comprehensive tool for microbial pangenome-wide association studies

Lees, John A ; Galardini, Marco ; Bentley, Stephen D ; Weiser, Jeffrey N ; Corander, Jukka Stegle, Oliver

Bioinformatics, 2018-12, Vol.34 (24), p.4310-4312 [Periódico revisado por pares]

England: Oxford University Press

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Good enough practices in scientific computing
Good enough practices in scientific computing
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Good enough practices in scientific computing

Wilson, Greg ; Bryan, Jennifer ; Cranston, Karen ; Kitzes, Justin ; Nederbragt, Lex ; Teal, Tracy K Ouellette, Francis

PLoS computational biology, 2017-06, Vol.13 (6), p.e1005510-e1005510 [Periódico revisado por pares]

United States: Public Library of Science

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3
RICOPILI: Rapid Imputation for COnsortias PIpeLIne
RICOPILI: Rapid Imputation for COnsortias PIpeLIne
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RICOPILI: Rapid Imputation for COnsortias PIpeLIne

Lam, Max ; Awasthi, Swapnil ; Watson, Hunna J ; Goldstein, Jackie ; Panagiotaropoulou, Georgia ; Trubetskoy, Vassily ; Karlsson, Robert ; Frei, Oleksander ; Fan, Chun-Chieh ; De Witte, Ward ; Mota, Nina R ; Mullins, Niamh ; Brügger, Kim ; Lee, S Hong ; Wray, Naomi R ; Skarabis, Nora ; Huang, Hailiang ; Neale, Benjamin ; Daly, Mark J ; Mattheisen, Manuel ; Walters, Raymond ; Ripke, Stephan Schwartz, Russell

Bioinformatics, 2020-02, Vol.36 (3), p.930-933 [Periódico revisado por pares]

England: Oxford University Press

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4
Evaluating β-amyloidosis progression in Alzheimer’s disease with Mueller polarimetry
Evaluating β-amyloidosis progression in Alzheimer’s disease with Mueller polarimetry
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Evaluating β-amyloidosis progression in Alzheimer’s disease with Mueller polarimetry

Borovkova, Mariia ; Bykov, Alexander ; Popov, Alexey ; Pierangelo, Angelo ; Novikova, Tatiana ; Pahnke, Jens ; Meglinski, Igor

Biomedical optics express, 2020-08, Vol.11 (8), p.4509-4519 [Periódico revisado por pares]

Optical Society of America - OSA Publishing

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5
immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking
immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking
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immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking

Weber, Cédric R ; Akbar, Rahmad ; Yermanos, Alexander ; Pavlović, Milena ; Snapkov, Igor ; Sandve, Geir K ; Reddy, Sai T ; Greiff, Victor Schwartz, Russell

Bioinformatics, 2020-06, Vol.36 (11), p.3594-3596 [Periódico revisado por pares]

England: Oxford University Press

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6
Machine-designed biotherapeutics: opportunities, feasibility and advantages of deep learning in computational antibody discovery
Machine-designed biotherapeutics: opportunities, feasibility and advantages of deep learning in computational antibody discovery
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Machine-designed biotherapeutics: opportunities, feasibility and advantages of deep learning in computational antibody discovery

Wilman, Wiktoria ; Wróbel, Sonia ; Bielska, Weronika ; Deszynski, Piotr ; Dudzic, Paweł ; Jaszczyszyn, Igor ; Kaniewski, Jędrzej ; Młokosiewicz, Jakub ; Rouyan, Anahita ; Satława, Tadeusz ; Kumar, Sandeep ; Greiff, Victor ; Krawczyk, Konrad

Briefings in bioinformatics, 2022-07, Vol.23 (4) [Periódico revisado por pares]

Oxford: Oxford University Press

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7
Swarm v3: towards tera-scale amplicon clustering
Swarm v3: towards tera-scale amplicon clustering
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Swarm v3: towards tera-scale amplicon clustering

Mahé, Frédéric ; Czech, Lucas ; Stamatakis, Alexandros ; Quince, Christopher ; de Vargas, Colomban ; Dunthorn, Micah ; Rognes, Torbjørn Birol, Inanc

Bioinformatics, 2022-01, Vol.38 (1), p.267-269 [Periódico revisado por pares]

England: Oxford University Press

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8
Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking
Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking
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Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking

Sandve, Geir Kjetil ; Greiff, Victor Valencia, Alfonso

Bioinformatics (Oxford, England), 2022-10, Vol.38 (21), p.4994-4996 [Periódico revisado por pares]

Oxford University Press

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9
Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits
Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits
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Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits

Dai, Kael ; Gratiy, Sergey L ; Billeh, Yazan N ; Xu, Richard ; Cai, Binghuang ; Cain, Nicholas ; Rimehaug, Atle E ; Stasik, Alexander J ; Einevoll, Gaute T ; Mihalas, Stefan ; Koch, Christof ; Arkhipov, Anton Marinazzo, Daniele

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008386-e1008386 [Periódico revisado por pares]

United States: Public Library of Science

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10
Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas
Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas
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Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas

van IJzendoorn, David G P ; Szuhai, Karoly ; Briaire-de Bruijn, Inge H ; Kostine, Marie ; Kuijjer, Marieke L ; Bovée, Judith V M G Ioshikhes, Ilya

PLoS computational biology, 2019-02, Vol.15 (2), p.e1006826-e1006826 [Periódico revisado por pares]

United States: Public Library of Science

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