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1
G-quadruplex forming sequences in the genome of all known human viruses: A comprehensive guide
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G-quadruplex forming sequences in the genome of all known human viruses: A comprehensive guide

Lavezzo, Enrico ; Berselli, Michele ; Frasson, Ilaria ; Perrone, Rosalba ; Palù, Giorgio ; Brazzale, Alessandra R ; Richter, Sara N ; Toppo, Stefano Lexa, Matej

PLoS computational biology, 2018-12, Vol.14 (12), p.e1006675 [Periódico revisado por pares]

United States: Public Library of Science

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2
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
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OpenMM 7: Rapid development of high performance algorithms for molecular dynamics

Eastman, Peter ; Swails, Jason ; Chodera, John D ; McGibbon, Robert T ; Zhao, Yutong ; Beauchamp, Kyle A ; Wang, Lee-Ping ; Simmonett, Andrew C ; Harrigan, Matthew P ; Stern, Chaya D ; Wiewiora, Rafal P ; Brooks, Bernard R ; Pande, Vijay S Gentleman, Robert

PLoS computational biology, 2017-07, Vol.13 (7), p.e1005659-e1005659 [Periódico revisado por pares]

United States: Public Library of Science

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3
UpSetR: an R package for the visualization of intersecting sets and their properties
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UpSetR: an R package for the visualization of intersecting sets and their properties

Conway, Jake R ; Lex, Alexander ; Gehlenborg, Nils Hancock, John

Bioinformatics (Oxford, England), 2017-09, Vol.33 (18), p.2938-2940 [Periódico revisado por pares]

England: Oxford University Press

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4
Parallelization of MAFFT for large-scale multiple sequence alignments
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Parallelization of MAFFT for large-scale multiple sequence alignments

Nakamura, Tsukasa ; Yamada, Kazunori D ; Tomii, Kentaro ; Katoh, Kazutaka Hancock, John

Bioinformatics, 2018-07, Vol.34 (14), p.2490-2492 [Periódico revisado por pares]

England: Oxford University Press

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5
GTDB-Tk v2: memory friendly classification with the genome taxonomy database
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GTDB-Tk v2: memory friendly classification with the genome taxonomy database

Chaumeil, Pierre-Alain ; Mussig, Aaron J ; Hugenholtz, Philip ; Parks, Donovan H Borgwardt, Karsten

Bioinformatics (Oxford, England), 2022-11, Vol.38 (23), p.5315-5316 [Periódico revisado por pares]

England: Oxford University Press

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6
admetSAR 2.0: web-service for prediction and optimization of chemical ADMET properties
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admetSAR 2.0: web-service for prediction and optimization of chemical ADMET properties

Yang, Hongbin ; Lou, Chaofeng ; Sun, Lixia ; Li, Jie ; Cai, Yingchun ; Wang, Zhuang ; Li, Weihua ; Liu, Guixia ; Tang, Yun Wren, Jonathan

Bioinformatics, 2019-03, Vol.35 (6), p.1067-1069 [Periódico revisado por pares]

England: Oxford University Press

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7
oncoPredict: an R package for predicting in vivo or cancer patient drug response and biomarkers from cell line screening data
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oncoPredict: an R package for predicting in vivo or cancer patient drug response and biomarkers from cell line screening data

Maeser, Danielle ; Gruener, Robert F ; Huang, Rong Stephanie

Briefings in bioinformatics, 2021-11, Vol.22 (6) [Periódico revisado por pares]

England: Oxford University Press

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8
YaHS: yet another Hi-C scaffolding tool
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YaHS: yet another Hi-C scaffolding tool

Zhou, Chenxi ; McCarthy, Shane A ; Durbin, Richard Alkan, Can

Bioinformatics (Oxford, England), 2023-01, Vol.39 (1) [Periódico revisado por pares]

England

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9
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

Wick, Ryan R ; Judd, Louise M ; Gorrie, Claire L ; Holt, Kathryn E Phillippy, Adam M.

PLoS computational biology, 2017-06, Vol.13 (6), p.e1005595-e1005595 [Periódico revisado por pares]

United States: Public Library of Science

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10
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
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MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

Katoh, Kazutaka ; Rozewicki, John ; Yamada, Kazunori D

Briefings in bioinformatics, 2019-07, Vol.20 (4), p.1160-1166 [Periódico revisado por pares]

England: Oxford University Press

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