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Material Type: Artigo
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BioBERT: a pre-trained biomedical language representation model for biomedical text miningLee, Jinhyuk ; Yoon, Wonjin ; Kim, Sungdong ; Kim, Donghyeon ; Kim, Sunkyu ; So, Chan Ho ; Kang, Jaewoo Wren, JonathanBioinformatics, 2020-02, Vol.36 (4), p.1234-1240 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy DatabaseChaumeil, Pierre-Alain ; Mussig, Aaron J ; Hugenholtz, Philip ; Parks, Donovan H Hancock, JohnBioinformatics, 2019-11, Vol.36 (6), p.1925-1927 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inferenceKozlov, Alexey M ; Darriba, Diego ; Flouri, Tomáš ; Morel, Benoit ; Stamatakis, Alexandros Wren, JonathanBioinformatics, 2019-11, Vol.35 (21), p.4453-4455 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Minimap2: pairwise alignment for nucleotide sequencesLi, Heng Birol, InancBioinformatics, 2018-09, Vol.34 (18), p.3094-3100 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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TISIDB: an integrated repository portal for tumor–immune system interactionsRu, Beibei ; Wong, Ching Ngar ; Tong, Yin ; Zhong, Jia Yi ; Zhong, Sophia Shek Wa ; Wu, Wai Chung ; Chu, Ka Chi ; Wong, Choi Yiu ; Lau, Chit Ying ; Chen, Ian ; Chan, Nam Wai ; Zhang, Jiangwen Wren, JonathanBioinformatics, 2019-10, Vol.35 (20), p.4200-4202 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score thresholdAramaki, Takuya ; Blanc-Mathieu, Romain ; Endo, Hisashi ; Ohkubo, Koichi ; Kanehisa, Minoru ; Goto, Susumu ; Ogata, Hiroyuki Valencia, AlfonsoBioinformatics, 2020-04, Vol.36 (7), p.2251-2252 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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clinker & clustermap.js: automatic generation of gene cluster comparison figuresGilchrist, Cameron L M ; Chooi, Yit-Heng Robinson, PeterBioinformatics (Oxford, England), 2021-08, Vol.37 (16), p.2473-2475 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Nextstrain: real-time tracking of pathogen evolutionHadfield, James ; Megill, Colin ; Bell, Sidney M ; Huddleston, John ; Potter, Barney ; Callender, Charlton ; Sagulenko, Pavel ; Bedford, Trevor ; Neher, Richard A Kelso, JanetBioinformatics, 2018-12, Vol.34 (23), p.4121-4123 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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VarSome: the human genomic variant search engineKopanos, Christos ; Tsiolkas, Vasilis ; Kouris, Alexandros ; Chapple, Charles E ; Albarca Aguilera, Monica ; Meyer, Richard ; Massouras, Andreas Wren, JonathanBioinformatics (Oxford, England), 2019-06, Vol.35 (11), p.1978-1980 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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GTDB-Tk v2: memory friendly classification with the genome taxonomy databaseChaumeil, Pierre-Alain ; Mussig, Aaron J ; Hugenholtz, Philip ; Parks, Donovan H Borgwardt, KarstenBioinformatics (Oxford, England), 2022-11, Vol.38 (23), p.5315-5316 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |