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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Afgan, Enis ; Nekrutenko, Anton ; Grüning, Bjórn A ; Blankenberg, Daniel ; Goecks, Jeremy ; Schatz, Michael C ; Ostrovsky, Alexander E ; Mahmoud, Alexandru ; Lonie, Andrew J ; Syme, Anna ; Bretaudeau, Anthony ; Kumar, Anup ; Eschenlauer, Arthur C ; DeSanto, Assunta D ; Guerler, Aysam ; Serrano-Solano, Beatriz ; Batut, Bérénice ; Grüning, Björn A ; Langhorst, Bradley W ; Carr, Bridget ; Raubenolt, Bryan A ; Hyde, Cameron J ; Bromhead, Catherine J ; Barnett, Christopher B ; Royaux, Coline ; Gallardo, Cristóbal ; Fornika, Daniel J ; Baker, Dannon ; Bouvier, Dave ; Clements, Dave ; de Lima Morais, David A ; Tabernero, David Lopez ; Lariviere, Delphine ; Nasr, Engy ; Zambelli, Federico ; Heyl, Florian ; Psomopoulos, Fotis ; Coppens, Frederik ; Price, Gareth R ; Cuccuru, Gianmauro ; Corguillé, Gildas Le ; Von Kuster, Greg ; Akbulut, Gulsum Gudukbay ; Rasche, Helena ; Hotz, Hans-Rudolf ; Eguinoa, Ignacio ; Makunin, Igor ; Ranawaka, Isuru J ; Taylor, James P ; Joshi, Jayadev ; Hillman-Jackson, Jennifer ; Chilton, John M ; Kamali, Kaivan ; Suderman, Keith ; Poterlowicz, Krzysztof ; Yvan, Le Bras ; Lopez-Delisle, Lucille ; Sargent, Luke ; Bassetti, Madeline E ; Tangaro, Marco Antonio ; van den Beek, Marius ; Čech, Martin ; Bernt, Matthias ; Fahrner, Matthias ; Tekman, Mehmet ; Föll, Melanie C ; Crusoe, Michael R ; Roncoroni, Miguel ; Kucher, Natalie ; Coraor, Nate ; Stoler, Nicholas ; Rhodes, Nick ; Soranzo, Nicola ; Pinter, Niko ; Goonasekera, Nuwan A ; Moreno, Pablo A ; Videm, Pavankumar ; Melanie, Petera ; Mandreoli, Pietro ; Jagtap, Pratik D ; Gu, Qiang ; Weber, Ralf J M ; Lazarus, Ross ; Vorderman, Ruben H P ; Hiltemann, Saskia ; Golitsynskiy, Sergey ; Garg, Shilpa ; Bray, Simon A ; Gladman, Simon L ; Leo, Simone ; Mehta, Subina P ; Griffin, Timothy J ; Jalili, Vahid ; Yves, Vandenbrouck ; Wen, Victor ; Nagampalli, Vijay K ; Bacon, Wendi A ; de Koning, Willem ; Maier, Wolfgang ; Briggs, Peter J

Nucleic acids research, 2022-07, Vol.50 (W1), p.W345-W351 [Periódico revisado por pares]

England: Oxford University Press

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2
CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor
CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor
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CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor

Shoemaker, Christopher J ; Huang, Tina Q ; Weir, Nicholas R ; Polyakov, Nicole J ; Schultz, Sebastian W ; Denic, Vladimir Simonsen, Anne

PLoS biology, 2019-04, Vol.17 (4), p.e2007044-e2007044 [Periódico revisado por pares]

United States: Public Library of Science

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3
JASPAR 2020: update of the open-access database of transcription factor binding profiles
JASPAR 2020: update of the open-access database of transcription factor binding profiles
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JASPAR 2020: update of the open-access database of transcription factor binding profiles

Fornes, Oriol ; Castro-Mondragon, Jaime A ; Khan, Aziz ; van der Lee, Robin ; Zhang, Xi ; Richmond, Phillip A ; Modi, Bhavi P ; Correard, Solenne ; Gheorghe, Marius ; Baranašić, Damir ; Santana-Garcia, Walter ; Tan, Ge ; Chèneby, Jeanne ; Ballester, Benoit ; Parcy, François ; Sandelin, Albin ; Lenhard, Boris ; Wasserman, Wyeth W ; Mathelier, Anthony

Nucleic acids research, 2020-01, Vol.48 (D1), p.D87-D92 [Periódico revisado por pares]

England: Oxford University Press

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4
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
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The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing

Keeling, Patrick J ; Burki, Fabien ; Wilcox, Heather M ; Allam, Bassem ; Allen, Eric E ; Amaral-Zettler, Linda A ; Armbrust, E Virginia ; Archibald, John M ; Bharti, Arvind K ; Bell, Callum J ; Beszteri, Bank ; Bidle, Kay D ; Cameron, Connor T ; Campbell, Lisa ; Caron, David A ; Cattolico, Rose Ann ; Collier, Jackie L ; Coyne, Kathryn ; Davy, Simon K ; Deschamps, Phillipe ; Dyhrman, Sonya T ; Edvardsen, Bente ; Gates, Ruth D ; Gobler, Christopher J ; Greenwood, Spencer J ; Guida, Stephanie M ; Jacobi, Jennifer L ; Jakobsen, Kjetill S ; James, Erick R ; Jenkins, Bethany ; John, Uwe ; Johnson, Matthew D ; Juhl, Andrew R ; Kamp, Anja ; Katz, Laura A ; Kiene, Ronald ; Kudryavtsev, Alexander ; Leander, Brian S ; Lin, Senjie ; Lovejoy, Connie ; Lynn, Denis ; Marchetti, Adrian ; McManus, George ; Nedelcu, Aurora M ; Menden-Deuer, Susanne ; Miceli, Cristina ; Mock, Thomas ; Montresor, Marina ; Moran, Mary Ann ; Murray, Shauna ; Nadathur, Govind ; Nagai, Satoshi ; Ngam, Peter B ; Palenik, Brian ; Pawlowski, Jan ; Petroni, Giulio ; Piganeau, Gwenael ; Posewitz, Matthew C ; Rengefors, Karin ; Romano, Giovanna ; Rumpho, Mary E ; Rynearson, Tatiana ; Schilling, Kelly B ; Schroeder, Declan C ; Simpson, Alastair G B ; Slamovits, Claudio H ; Smith, David R ; Smith, G Jason ; Smith, Sarah R ; Sosik, Heidi M ; Stief, Peter ; Theriot, Edward ; Twary, Scott N ; Umale, Pooja E ; Vaulot, Daniel ; Wawrik, Boris ; Wheeler, Glen L ; Wilson, William H ; Xu, Yan ; Zingone, Adriana ; Worden, Alexandra Z Roberts, Roland G.

PLoS biology, 2014-06, Vol.12 (6), p.e1001889 [Periódico revisado por pares]

United States: Public Library of Science (PLoS)

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5
The evolution and changing ecology of the African hominid oral microbiome
The evolution and changing ecology of the African hominid oral microbiome
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The evolution and changing ecology of the African hominid oral microbiome

Fellows Yates, James A ; Velsko, Irina M ; Aron, Franziska ; Posth, Cosimo ; Hofman, Courtney A ; Austin, Rita M ; Parker, Cody E ; Mann, Allison E ; Nägele, Kathrin ; Arthur, Kathryn Weedman ; Arthur, John W ; Bauer, Catherine C ; Crevecoeur, Isabelle ; Cupillard, Christophe ; Curtis, Matthew C ; Dalén, Love ; Díaz-Zorita Bonilla, Marta ; Díez Fernández-Lomana, J Carlos ; Drucker, Dorothée G ; Escribano Escrivá, Elena ; Francken, Michael ; Gibbon, Victoria E ; González Morales, Manuel R ; Grande Mateu, Ana ; Harvati, Katerina ; Henry, Amanda G ; Humphrey, Louise ; Menéndez, Mario ; Mihailović, Dušan ; Peresani, Marco ; Rodríguez Moroder, Sofía ; Roksandic, Mirjana ; Rougier, Hélène ; Sázelová, Sandra ; Stock, Jay T ; Straus, Lawrence Guy ; Svoboda, Jiří ; Teßmann, Barbara ; Walker, Michael J ; Power, Robert C ; Lewis, Cecil M ; Sankaranarayanan, Krithivasan ; Guschanski, Katerina ; Wrangham, Richard W ; Dewhirst, Floyd E ; Salazar-García, Domingo C ; Krause, Johannes ; Herbig, Alexander ; Warinner, Christina

Proceedings of the National Academy of Sciences - PNAS, 2021-05, Vol.118 (20), p.1 [Periódico revisado por pares]

United States: National Academy of Sciences

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6
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
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RNAmmer: consistent and rapid annotation of ribosomal RNA genes

Lagesen, Karin ; Hallin, Peter ; Rødland, Einar Andreas ; Stærfeldt, Hans-Henrik ; Rognes, Torbjørn ; Ussery, David W

Nucleic acids research, 2007-05, Vol.35 (9), p.3100-3108 [Periódico revisado por pares]

England: Oxford University Press

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7
The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered
The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered
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The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered

Abarenkov, Kessy ; Nilsson, R Henrik ; Larsson, Karl-Henrik ; Taylor, Andy F S ; May, Tom W ; Frøslev, Tobias Guldberg ; Pawlowska, Julia ; Lindahl, Björn ; Põldmaa, Kadri ; Truong, Camille ; Vu, Duong ; Hosoya, Tsuyoshi ; Niskanen, Tuula ; Piirmann, Timo ; Ivanov, Filipp ; Zirk, Allan ; Peterson, Marko ; Cheeke, Tanya E ; Ishigami, Yui ; Jansson, Arnold Tobias ; Jeppesen, Thomas Stjernegaard ; Kristiansson, Erik ; Mikryukov, Vladimir ; Miller, Joseph T ; Oono, Ryoko ; Ossandon, Francisco J ; Paupério, Joana ; Saar, Irja ; Schigel, Dmitry ; Suija, Ave ; Tedersoo, Leho ; Kõljalg, Urmas

Nucleic acids research, 2024, Vol.52 (D1), p.D791-D797 [Periódico revisado por pares]

England: Oxford University Press

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8
Reconciling taxon senescence with the Red Queen's hypothesis
Reconciling taxon senescence with the Red Queen's hypothesis
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Reconciling taxon senescence with the Red Queen's hypothesis

Žliobaitė, Indrė ; Fortelius, Mikael ; Stenseth, Nils C

Nature (London), 2017-12, Vol.552 (7683), p.92-95 [Periódico revisado por pares]

England: Nature Publishing Group

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9
Silencing of STE20‐type kinase MST3 in mice with antisense oligonucleotide treatment ameliorates diet‐induced nonalcoholic fatty liver disease
Silencing of STE20‐type kinase MST3 in mice with antisense oligonucleotide treatment ameliorates diet‐induced nonalcoholic fatty liver disease
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Silencing of STE20‐type kinase MST3 in mice with antisense oligonucleotide treatment ameliorates diet‐induced nonalcoholic fatty liver disease

Caputo, Mara ; Kurhe, Yeshwant ; Kumari, Sima ; Cansby, Emmelie ; Amrutkar, Manoj ; Scandalis, Eli ; Booten, Sheri L. ; Ståhlman, Marcus ; Borén, Jan ; Marschall, Hanns‐Ulrich ; Aghajan, Mariam ; Mahlapuu, Margit

The FASEB journal, 2021-05, Vol.35 (5), p.e21567-n/a [Periódico revisado por pares]

United States

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10
Protease activated receptors (PAR)‐1 and ‐2 mediate cellular effects of factor VII activating protease (FSAP)
Protease activated receptors (PAR)‐1 and ‐2 mediate cellular effects of factor VII activating protease (FSAP)
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Protease activated receptors (PAR)‐1 and ‐2 mediate cellular effects of factor VII activating protease (FSAP)

Byskov, Kristina ; Le Gall, Sylvain M. ; Thiede, Bernd ; Camerer, Eric ; Kanse, Sandip M.

The FASEB journal, 2020-01, Vol.34 (1), p.1079-1090 [Periódico revisado por pares]

United States: Federation of American Society of Experimental Biology

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