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Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility
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Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility

Denise, Rémi ; Abby, Sophie S ; Rocha, Eduardo P C Beeby, Morgan

PLoS biology, 2019-07, Vol.17 (7), p.e3000390-e3000390 [Peer Reviewed Journal]

United States: Public Library of Science

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2
MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems
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MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems

Abby, Sophie S ; Néron, Bertrand ; Ménager, Hervé ; Touchon, Marie ; Rocha, Eduardo P C Torres, Néstor V.

PloS one, 2014-10, Vol.9 (10), p.e110726-e110726 [Peer Reviewed Journal]

United States: Public Library of Science

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3
The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella
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The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella

Touchon, Marie ; Rocha, Eduardo P C Randau, Lennart

PloS one, 2010-06, Vol.5 (6), p.e11126-e11126 [Peer Reviewed Journal]

United States: Public Library of Science

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4
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

Gautreau, Guillaume ; Bazin, Adelme ; Gachet, Mathieu ; Planel, Rémi ; Burlot, Laura ; Dubois, Mathieu ; Perrin, Amandine ; Médigue, Claudine ; Calteau, Alexandra ; Cruveiller, Stéphane ; Matias, Catherine ; Ambroise, Christophe ; Rocha, Eduardo P C ; Vallenet, David Ouzounis, Christos A.

PLoS computational biology, 2020-03, Vol.16 (3), p.e1007732-e1007732 [Peer Reviewed Journal]

United States: Public Library of Science

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5
The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation
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The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation

Guglielmini, Julien ; Quintais, Leonor ; Garcillán-Barcia, Maria Pilar ; de la Cruz, Fernando ; Rocha, Eduardo P C Casadesús, Josep

PLoS genetics, 2011-08, Vol.7 (8), p.e1002222-e1002222 [Peer Reviewed Journal]

United States: Public Library of Science

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6
The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems
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The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems

Abby, Sophie S ; Rocha, Eduardo P C Achtman, Mark

PLoS genetics, 2012-09, Vol.8 (9), p.e1002983-e1002983 [Peer Reviewed Journal]

United States: Public Library of Science

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7
Bacteriophages benefit from generalized transduction
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Bacteriophages benefit from generalized transduction

Fillol-Salom, Alfred ; Alsaadi, Ahlam ; Sousa, Jorge A Moura de ; Zhong, Li ; Foster, Kevin R ; Rocha, Eduardo P C ; Penadés, José R ; Ingmer, Hanne ; Haaber, Jakob Otto, Michael

PLoS pathogens, 2019-07, Vol.15 (7), p.e1007888 [Peer Reviewed Journal]

United States: Public Library of Science

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8
The systemic imprint of growth and its uses in ecological (meta)genomics
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The systemic imprint of growth and its uses in ecological (meta)genomics

Vieira-Silva, Sara ; Rocha, Eduardo P C Moran, Nancy A.

PLoS genetics, 2010-01, Vol.6 (1), p.e1000808 [Peer Reviewed Journal]

United States: Public Library of Science

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9
Microbial defenses against mobile genetic elements and viruses: Who defends whom from what?
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Microbial defenses against mobile genetic elements and viruses: Who defends whom from what?

Rocha, Eduardo P C ; Bikard, David

PLoS biology, 2022-01, Vol.20 (1), p.e3001514-e3001514 [Peer Reviewed Journal]

United States: Public Library of Science

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10
Comparative and evolutionary analysis of the bacterial homologous recombination systems
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Comparative and evolutionary analysis of the bacterial homologous recombination systems

Rocha, Eduardo P C ; Cornet, Emmanuel ; Michel, Bénédicte Bell, Stephen D

PLoS genetics, 2005-08, Vol.1 (2), p.e15-e15 [Peer Reviewed Journal]

United States: Public Library of Science

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