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Nanopore sequencing and assembly of a human genome with ultra-long reads
Nanopore sequencing and assembly of a human genome with ultra-long reads
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Nanopore sequencing and assembly of a human genome with ultra-long reads

Jain, Miten ; Koren, Sergey ; Miga, Karen H ; Quick, Josh ; Rand, Arthur C ; Sasani, Thomas A ; Tyson, John R ; Beggs, Andrew D ; Dilthey, Alexander T ; Fiddes, Ian T ; Malla, Sunir ; Marriott, Hannah ; Nieto, Tom ; O'Grady, Justin ; Olsen, Hugh E ; Pedersen, Brent S ; Rhie, Arang ; Richardson, Hollian ; Quinlan, Aaron R ; Snutch, Terrance P ; Tee, Louise ; Paten, Benedict ; Phillippy, Adam M ; Simpson, Jared T ; Loman, Nicholas J ; Loose, Matthew

Nature biotechnology, 2018-04, Vol.36 (4), p.338-345 [Periódico revisado por pares]

United States: Nature Publishing Group

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2
Pseudomonas aeruginosa infection in augmented care: the molecular ecology and transmission dynamics in four large UK hospitals
Pseudomonas aeruginosa infection in augmented care: the molecular ecology and transmission dynamics in four large UK hospitals
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Pseudomonas aeruginosa infection in augmented care: the molecular ecology and transmission dynamics in four large UK hospitals

Halstead, F.D. ; Quick, J. ; Niebel, M. ; Garvey, M. ; Cumley, N. ; Smith, R. ; Neal, T. ; Roberts, P. ; Hardy, K. ; Shabir, S. ; Walker, J.T. ; Hawkey, P. ; Loman, N.J.

The Journal of hospital infection, 2021-05, Vol.111, p.162-168 [Periódico revisado por pares]

England: Elsevier Ltd

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3
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance
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CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance

Nicholls, Samuel M ; Poplawski, Radoslaw ; Bull, Matthew J ; Underwood, Anthony ; Chapman, Michael ; Abu-Dahab, Khalil ; Taylor, Ben ; Colquhoun, Rachel M ; Rowe, Will P M ; Jackson, Ben ; Hill, Verity ; O'Toole, Áine ; Rey, Sara ; Southgate, Joel ; Amato, Roberto ; Livett, Rich ; Gonçalves, Sónia ; Harrison, Ewan M ; Peacock, Sharon J ; Aanensen, David M ; Rambaut, Andrew ; Connor, Thomas R ; Loman, Nicholas J

Genome Biology, 2021-07, Vol.22 (1), p.196-196, Article 196 [Periódico revisado por pares]

England: BioMed Central

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4
Mycobacterial dihydrofolate reductase inhibitors identified using chemogenomic methods and in vitro validation
Mycobacterial dihydrofolate reductase inhibitors identified using chemogenomic methods and in vitro validation
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Mycobacterial dihydrofolate reductase inhibitors identified using chemogenomic methods and in vitro validation

Mugumbate, Grace ; Abrahams, Katherine A ; Cox, Jonathan A G ; Papadatos, George ; van Westen, Gerard ; Lelièvre, Joël ; Calus, Szymon T ; Loman, Nicholas J ; Ballell, Lluis ; Barros, David ; Overington, John P ; Besra, Gurdyal S Tyagi, Anil Kumar

PloS one, 2015-03, Vol.10 (3), p.e0121492-e0121492 [Periódico revisado por pares]

United States: Public Library of Science

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5
A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4
A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4
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A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4

Loman, Nicholas J ; Constantinidou, Chrystala ; Christner, Martin ; Rohde, Holger ; Chan, Jacqueline Z.-M ; Quick, Joshua ; Weir, Jacqueline C ; Quince, Christopher ; Smith, Geoffrey P ; Betley, Jason R ; Aepfelbacher, Martin ; Pallen, Mark J

JAMA : the journal of the American Medical Association, 2013-04, Vol.309 (14), p.1502-1510 [Periódico revisado por pares]

Chicago, IL: American Medical Association

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6
Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1
Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1
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Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

Tsui, Joseph L-H ; McCrone, John T ; Lambert, Ben ; Bajaj, Sumali ; Inward, Rhys P D ; Bosetti, Paolo ; Pena, Rosario Evans ; Tegally, Houriiyah ; Hill, Verity ; Zarebski, Alexander E ; Peacock, Thomas P ; Liu, Luyang ; Wu, Neo ; Davis, Megan ; Bogoch, Isaac I ; Khan, Kamran ; Kall, Meaghan ; Abdul Aziz, Nurin Iwani Binti ; Colquhoun, Rachel ; O'Toole, Áine ; Jackson, Ben ; Dasgupta, Abhishek ; Wilkinson, Eduan ; de Oliveira, Tulio ; Connor, Thomas R ; Loman, Nicholas J ; Colizza, Vittoria ; Fraser, Christophe ; Volz, Erik ; Ji, Xiang ; Gutierrez, Bernardo ; Chand, Meera ; Dellicour, Simon ; Cauchemez, Simon ; Raghwani, Jayna ; Suchard, Marc A ; Lemey, Philippe ; Rambaut, Andrew ; Pybus, Oliver G ; Kraemer, Moritz U G

Science (American Association for the Advancement of Science), 2023-07, Vol.381 (6655), p.336-343 [Periódico revisado por pares]

United States: The American Association for the Advancement of Science

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7
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil
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Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil

Faria, Nuno R ; Mellan, Thomas A ; Whittaker, Charles ; Claro, Ingra M ; Candido, Darlan da S ; Mishra, Swapnil ; Crispim, Myuki A E ; Sales, Flavia C S ; Hawryluk, Iwona ; McCrone, John T ; Hulswit, Ruben J G ; Franco, Lucas A M ; Ramundo, Mariana S ; de Jesus, Jaqueline G ; Andrade, Pamela S ; Coletti, Thais M ; Ferreira, Giulia M ; Silva, Camila A M ; Manuli, Erika R ; Pereira, Rafael H M ; Peixoto, Pedro S ; Kraemer, Moritz U G ; Gaburo, Jr, Nelson ; Camilo, Cecilia da C ; Hoeltgebaum, Henrique ; Souza, William M ; Rocha, Esmenia C ; de Souza, Leandro M ; de Pinho, Mariana C ; Araujo, Leonardo J T ; Malta, Frederico S V ; de Lima, Aline B ; Silva, Joice do P ; Zauli, Danielle A G ; Ferreira, Alessandro C de S ; Schnekenberg, Ricardo P ; Laydon, Daniel J ; Walker, Patrick G T ; Schlüter, Hannah M ; Dos Santos, Ana L P ; Vidal, Maria S ; Del Caro, Valentina S ; Filho, Rosinaldo M F ; Dos Santos, Helem M ; Aguiar, Renato S ; Proença-Modena, José L ; Nelson, Bruce ; Hay, James A ; Monod, Mélodie ; Miscouridou, Xenia ; Coupland, Helen ; Sonabend, Raphael ; Vollmer, Michaela ; Gandy, Axel ; Prete, Jr, Carlos A ; Nascimento, Vitor H ; Suchard, Marc A ; Bowden, Thomas A ; Pond, Sergei L K ; Wu, Chieh-Hsi ; Ratmann, Oliver ; Ferguson, Neil M ; Dye, Christopher ; Loman, Nick J ; Lemey, Philippe ; Rambaut, Andrew ; Fraiji, Nelson A ; Carvalho, Maria do P S S ; Pybus, Oliver G ; Flaxman, Seth ; Bhatt, Samir ; Sabino, Ester C

Science (American Association for the Advancement of Science), 2021-05, Vol.372 (6544), p.815-821 [Periódico revisado por pares]

United States: The American Association for the Advancement of Science

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8
Open-Source Genomic Analysis of Shiga-Toxin–Producing E. coli O104:H4
Open-Source Genomic Analysis of Shiga-Toxin–Producing E. coli O104:H4
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Open-Source Genomic Analysis of Shiga-Toxin–Producing E. coli O104:H4

Rohde, Holger ; Qin, Junjie ; Cui, Yujun ; Li, Dongfang ; Li, Yin ; Li, Junhua ; Li, Shenghui ; Li, Yingrui ; Loman, Nicholas J ; Hentschke, Moritz ; Chen, Wentong ; Pu, Fei ; Peng, Yangqing ; Xi, Feng ; Zhang, Zhaoxi ; Yang, Liang ; Yang, Huanming ; Yang, Ruifu ; Yang, Xianwei ; Zhao, Xiangna ; Zhao, Meiru ; Wang, Jian ; Wang, Jun ; Wang, Peng ; Guan, Yuanlin ; Cen, Zhong ; Christner, Martin ; Kobbe, Robin ; Loos, Sebastian ; Oh, Jun ; Danchin, Antoine ; Gao, George F ; Song, Yajun ; Xu, Jianguo ; Pallen, Mark J ; Aepfelbacher, Martin

The New England journal of medicine, 2011-08, Vol.365 (8), p.718-724 [Periódico revisado por pares]

Waltham, MA: Massachusetts Medical Society

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9
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018
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Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018

Hill, Sarah C ; de Souza, Renato ; Thézé, Julien ; Claro, Ingra ; Aguiar, Renato S ; Abade, Leandro ; Santos, Fabiana C P ; Cunha, Mariana S ; Nogueira, Juliana S ; Salles, Flavia C S ; Rocco, Iray M ; Maeda, Adriana Y ; Vasami, Fernanda G S ; du Plessis, Louis ; Silveira, Paola P ; de Jesus, Jaqueline G ; Quick, Joshua ; Fernandes, Natália C C A ; Guerra, Juliana M ; Réssio, Rodrigo A ; Giovanetti, Marta ; Alcantara, Luiz C J ; Cirqueira, Cinthya S ; Díaz-Delgado, Josué ; Macedo, Fernando L L ; Timenetsky, Maria do Carmo S T ; de Paula, Regiane ; Spinola, Roberta ; Telles de Deus, Juliana ; Mucci, Luís F ; Tubaki, Rosa Maria ; de Menezes, Regiane M T ; Ramos, Patrícia L ; de Abreu, Andre L ; Cruz, Laura N ; Loman, Nick ; Dellicour, Simon ; Pybus, Oliver G ; Sabino, Ester C ; Faria, Nuno R Lauring, Adam S.

PLoS pathogens, 2020-08, Vol.16 (8), p.e1008699-e1008699 [Periódico revisado por pares]

United States: Public Library of Science

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10
Molecular Classification of Familial Non-BRCA1/BRCA2 Breast Cancer
Molecular Classification of Familial Non-BRCA1/BRCA2 Breast Cancer
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Molecular Classification of Familial Non-BRCA1/BRCA2 Breast Cancer

Hedenfalk, Ingrid ; Ringnér, Markus ; Ben-Dor, Amir ; Yakhini, Zohar ; Chen, Yidong ; Chebil, Gunilla ; Ach, Robert ; Loman, Niklas ; Olsson, Håkan ; Meltzer, Paul ; Borg, Åke ; Trent, Jeffrey

Proceedings of the National Academy of Sciences - PNAS, 2003-03, Vol.100 (5), p.2532-2537 [Periódico revisado por pares]

United States: National Academy of Sciences

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