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The PSIPRED Protein Analysis Workbench: 20 years on
The PSIPRED Protein Analysis Workbench: 20 years on
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The PSIPRED Protein Analysis Workbench: 20 years on

Buchan, Daniel W A ; Jones, David T

Nucleic acids research, 2019-07, Vol.47 (W1), p.W402-W407 [Periódico revisado por pares]

England: Oxford University Press

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2
Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes
Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes
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Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes

Donath, Alexander ; Jühling, Frank ; Al-Arab, Marwa ; Bernhart, Stephan H ; Reinhardt, Franziska ; Stadler, Peter F ; Middendorf, Martin ; Bernt, Matthias

Nucleic acids research, 2019-11, Vol.47 (20), p.10543-10552 [Periódico revisado por pares]

England: Oxford University Press

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3
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Zhou, Naihui ; Jiang, Yuxiang ; Lee, Alexandra J ; Kacsoh, Balint Z ; Crocker, Alex W ; Georghiou, George ; Nguyen, Huy N ; Hamid, Md Nafiz ; Davis, Larry ; Atalay, Volkan ; Rifaioglu, Ahmet S ; Dalkıran, Alperen ; Cetin Atalay, Rengul ; Zhang, Chengxin ; Hurto, Rebecca L ; Freddolino, Peter L ; Supek, Fran ; Fernández, José M ; Gemovic, Branislava ; Sumonja, Neven ; Veljkovic, Nevena ; Asgari, Ehsaneddin ; Mofrad, Mohammad R K ; Savojardo, Castrense ; Martelli, Pier Luigi ; Casadio, Rita ; Boecker, Florian ; Schoof, Heiko ; Thurlby, Natalie ; McHardy, Alice C ; Renaux, Alexandre ; Saidi, Rabie ; Gough, Julian ; Freitas, Alex A ; Antczak, Magdalena ; Fabris, Fabio ; Wass, Mark N ; Hou, Jie ; Wang, Zheng ; Romero, Alfonso E ; Paccanaro, Alberto ; Yang, Haixuan ; Goldberg, Tatyana ; Zhao, Chenguang ; Holm, Liisa ; Tseng, Wei-Cheng ; Linial, Michal ; Rose, Peter W ; Dessimoz, Christophe ; Dzeroski, Saso ; Sillitoe, Ian ; Das, Sayoni ; Wan, Cen ; Fa, Rui ; Notaro, Marco ; Grossi, Giuliano ; Valentini, Giorgio ; Mesiti, Marco ; Ritchie, David W ; Aridhi, Sabeur ; Bonneau, Richard ; Gligorijević, Vladimir ; Fang, Hai ; Toppo, Stefano ; Falda, Marco ; Berselli, Michele ; Mao, Qizhong ; Black, Gage S ; Suh, Erica ; Dayton, Jonathan B ; Larsen, Dallas J ; Omdahl, Ashton R ; McGuffin, Liam J ; Brackenridge, Danielle A ; Babbitt, Patricia C ; Yunes, Jeffrey M ; Fontana, Paolo ; Zhang, Feng ; Zhu, Shanfeng ; Dai, Suyang ; Yao, Shuwei ; Cao, Renzhi ; Amezola, Miguel ; Johnson, Devon ; Liu, Yi-Wei ; Frank, Yotam ; Hoehndorf, Robert ; Kulmanov, Maxat ; Björne, Jari ; Tolvanen, Martti E E ; Salakoski, Tapio ; Altenhoff, Adrian ; Ben-Hur, Asa ; Rost, Burkhard ; Orengo, Christine A ; Bosco, Giovanni ; Martin, Maria J ; Mooney, Sean D ; Greene, Casey S ; Radivojac, Predrag

Genome Biology, 2019-11, Vol.20 (1), p.244-244, Article 244 [Periódico revisado por pares]

England: BioMed Central

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4
The status of the human gene catalogue
The status of the human gene catalogue
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The status of the human gene catalogue

Amaral, Paulo ; Carbonell-Sala, Silvia ; De La Vega, Francisco M ; Faial, Tiago ; Frankish, Adam ; Gingeras, Thomas ; Guigo, Roderic ; Harrow, Jennifer L ; Hatzigeorgiou, Artemis G ; Johnson, Rory ; Murphy, Terence D ; Pertea, Mihaela ; Pruitt, Kim D ; Pujar, Shashikant ; Takahashi, Hazuki ; Ulitsky, Igor ; Varabyou, Ales ; Wells, Christine A ; Yandell, Mark ; Carninci, Piero ; Salzberg, Steven L

Nature (London), 2023-10, Vol.622 (7981), p.41-47 [Periódico revisado por pares]

England: Nature Publishing Group

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5
GB2sequin - A file converter preparing custom GenBank files for database submission
GB2sequin - A file converter preparing custom GenBank files for database submission
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GB2sequin - A file converter preparing custom GenBank files for database submission

Lehwark, Pascal ; Greiner, Stephan

Genomics (San Diego, Calif.), 2019-07, Vol.111 (4), p.759-761 [Periódico revisado por pares]

United States: Elsevier Inc

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6
Progress, Challenges, and Surprises in Annotating the Human Genome
Progress, Challenges, and Surprises in Annotating the Human Genome
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Progress, Challenges, and Surprises in Annotating the Human Genome

Zerbino, Daniel R ; Frankish, Adam ; Flicek, Paul

Annual review of genomics and human genetics, 2020-08, Vol.21 (1), p.55-79 [Periódico revisado por pares]

United States: Annual Reviews

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7
Identifying pseudoenzymes using functional annotation: pitfalls of common practice
Identifying pseudoenzymes using functional annotation: pitfalls of common practice
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Identifying pseudoenzymes using functional annotation: pitfalls of common practice

Ribeiro, Antonio J. M. ; Tyzack, Jonathan D. ; Borkakoti, Neera ; Thornton, Janet M.

The FEBS journal, 2020-10, Vol.287 (19), p.4128-4140 [Periódico revisado por pares]

England: Blackwell Publishing Ltd

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8
Twelve quick steps for genome assembly and annotation in the classroom
Twelve quick steps for genome assembly and annotation in the classroom
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Twelve quick steps for genome assembly and annotation in the classroom

Jung, Hyungtaek ; Ventura, Tomer ; Chung, J Sook ; Kim, Woo-Jin ; Nam, Bo-Hye ; Kong, Hee Jeong ; Kim, Young-Ok ; Jeon, Min-Seung ; Eyun, Seong-Il Ouellette, Francis

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008325-e1008325 [Periódico revisado por pares]

United States: Public Library of Science

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9
Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species
Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species
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Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species

Guyeux, Christophe ; Charr, Jean-Claude ; Tran, Hue T M ; Furtado, Agnelo ; Henry, Robert J ; Crouzillat, Dominique ; Guyot, Romain ; Hamon, Perla Chiang, Tzen-Yuh

PloS one, 2019-06, Vol.14 (6), p.e0216347-e0216347 [Periódico revisado por pares]

United States: Public Library of Science

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10
Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus
Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus
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Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus

Athanasouli, Marina ; Witte, Hanh ; Weiler, Christian ; Loschko, Tobias ; Eberhardt, Gabi ; Sommer, Ralf J ; Rödelsperger, Christian

BMC genomics, 2020-10, Vol.21 (1), p.708-708, Article 708 [Periódico revisado por pares]

England: BioMed Central Ltd

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