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Detecting circular RNAs: bioinformatic and experimental challenges
Detecting circular RNAs: bioinformatic and experimental challenges
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Detecting circular RNAs: bioinformatic and experimental challenges

Szabo, Linda ; Salzman, Julia

Nature reviews. Genetics, 2016-11, Vol.17 (11), p.679-692 [Periódico revisado por pares]

England: Nature Publishing Group

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2
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Zhou, Naihui ; Jiang, Yuxiang ; Lee, Alexandra J ; Kacsoh, Balint Z ; Crocker, Alex W ; Georghiou, George ; Nguyen, Huy N ; Hamid, Md Nafiz ; Davis, Larry ; Atalay, Volkan ; Rifaioglu, Ahmet S ; Dalkıran, Alperen ; Cetin Atalay, Rengul ; Zhang, Chengxin ; Hurto, Rebecca L ; Freddolino, Peter L ; Supek, Fran ; Fernández, José M ; Gemovic, Branislava ; Sumonja, Neven ; Veljkovic, Nevena ; Asgari, Ehsaneddin ; Mofrad, Mohammad R K ; Savojardo, Castrense ; Martelli, Pier Luigi ; Casadio, Rita ; Boecker, Florian ; Schoof, Heiko ; Thurlby, Natalie ; McHardy, Alice C ; Renaux, Alexandre ; Saidi, Rabie ; Gough, Julian ; Freitas, Alex A ; Antczak, Magdalena ; Fabris, Fabio ; Wass, Mark N ; Hou, Jie ; Wang, Zheng ; Romero, Alfonso E ; Paccanaro, Alberto ; Yang, Haixuan ; Goldberg, Tatyana ; Zhao, Chenguang ; Holm, Liisa ; Tseng, Wei-Cheng ; Linial, Michal ; Rose, Peter W ; Dessimoz, Christophe ; Dzeroski, Saso ; Sillitoe, Ian ; Das, Sayoni ; Wan, Cen ; Fa, Rui ; Notaro, Marco ; Grossi, Giuliano ; Valentini, Giorgio ; Mesiti, Marco ; Ritchie, David W ; Aridhi, Sabeur ; Bonneau, Richard ; Gligorijević, Vladimir ; Fang, Hai ; Toppo, Stefano ; Falda, Marco ; Berselli, Michele ; Mao, Qizhong ; Black, Gage S ; Suh, Erica ; Dayton, Jonathan B ; Larsen, Dallas J ; Omdahl, Ashton R ; McGuffin, Liam J ; Brackenridge, Danielle A ; Babbitt, Patricia C ; Yunes, Jeffrey M ; Fontana, Paolo ; Zhang, Feng ; Zhu, Shanfeng ; Dai, Suyang ; Yao, Shuwei ; Cao, Renzhi ; Amezola, Miguel ; Johnson, Devon ; Liu, Yi-Wei ; Frank, Yotam ; Hoehndorf, Robert ; Kulmanov, Maxat ; Björne, Jari ; Tolvanen, Martti E E ; Salakoski, Tapio ; Altenhoff, Adrian ; Ben-Hur, Asa ; Rost, Burkhard ; Orengo, Christine A ; Bosco, Giovanni ; Martin, Maria J ; Mooney, Sean D ; Greene, Casey S ; Radivojac, Predrag

Genome Biology, 2019-11, Vol.20 (1), p.244-244, Article 244 [Periódico revisado por pares]

England: BioMed Central

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3
Next-generation transcriptome assembly
Next-generation transcriptome assembly
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Next-generation transcriptome assembly

Martin, Jeffrey A ; Wang, Zhong

Nature reviews. Genetics, 2011-10, Vol.12 (10), p.671-682 [Periódico revisado por pares]

London: Nature Publishing Group

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4
A beginner's guide to eukaryotic genome annotation
A beginner's guide to eukaryotic genome annotation
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A beginner's guide to eukaryotic genome annotation

YANDELL, Mark ; ENCE, Daniel

Nature reviews. Genetics, 2012-05, Vol.13 (5), p.329-342 [Periódico revisado por pares]

London: Nature Publishing Group

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5
The status of the human gene catalogue
The status of the human gene catalogue
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The status of the human gene catalogue

Amaral, Paulo ; Carbonell-Sala, Silvia ; De La Vega, Francisco M ; Faial, Tiago ; Frankish, Adam ; Gingeras, Thomas ; Guigo, Roderic ; Harrow, Jennifer L ; Hatzigeorgiou, Artemis G ; Johnson, Rory ; Murphy, Terence D ; Pertea, Mihaela ; Pruitt, Kim D ; Pujar, Shashikant ; Takahashi, Hazuki ; Ulitsky, Igor ; Varabyou, Ales ; Wells, Christine A ; Yandell, Mark ; Carninci, Piero ; Salzberg, Steven L

Nature (London), 2023-10, Vol.622 (7981), p.41-47 [Periódico revisado por pares]

England: Nature Publishing Group

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6
Haplotype phasing: existing methods and new developments
Haplotype phasing: existing methods and new developments
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Haplotype phasing: existing methods and new developments

Browning, Sharon R ; Browning, Brian L

Nature reviews. Genetics, 2011-10, Vol.12 (10), p.703-714 [Periódico revisado por pares]

London: Nature Publishing Group

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7
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models
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SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models

Aziz, Ramy K ; Devoid, Scott ; Disz, Terrence ; Edwards, Robert A ; Henry, Christopher S ; Olsen, Gary J ; Olson, Robert ; Overbeek, Ross ; Parrello, Bruce ; Pusch, Gordon D ; Stevens, Rick L ; Vonstein, Veronika ; Xia, Fangfang Ahmed, Niyaz

PloS one, 2012-10, Vol.7 (10), p.e48053-e48053 [Periódico revisado por pares]

United States: Public Library of Science

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8
Twelve quick steps for genome assembly and annotation in the classroom
Twelve quick steps for genome assembly and annotation in the classroom
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Twelve quick steps for genome assembly and annotation in the classroom

Jung, Hyungtaek ; Ventura, Tomer ; Chung, J Sook ; Kim, Woo-Jin ; Nam, Bo-Hye ; Kong, Hee Jeong ; Kim, Young-Ok ; Jeon, Min-Seung ; Eyun, Seong-Il Ouellette, Francis

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008325-e1008325 [Periódico revisado por pares]

United States: Public Library of Science

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9
Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species
Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species
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Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species

Guyeux, Christophe ; Charr, Jean-Claude ; Tran, Hue T M ; Furtado, Agnelo ; Henry, Robert J ; Crouzillat, Dominique ; Guyot, Romain ; Hamon, Perla Chiang, Tzen-Yuh

PloS one, 2019-06, Vol.14 (6), p.e0216347-e0216347 [Periódico revisado por pares]

United States: Public Library of Science

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10
Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus
Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus
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Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus

Athanasouli, Marina ; Witte, Hanh ; Weiler, Christian ; Loschko, Tobias ; Eberhardt, Gabi ; Sommer, Ralf J ; Rödelsperger, Christian

BMC genomics, 2020-10, Vol.21 (1), p.708-708, Article 708 [Periódico revisado por pares]

England: BioMed Central Ltd

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