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Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes
Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes
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Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes

Donath, Alexander ; Jühling, Frank ; Al-Arab, Marwa ; Bernhart, Stephan H ; Reinhardt, Franziska ; Stadler, Peter F ; Middendorf, Martin ; Bernt, Matthias

Nucleic acids research, 2019-11, Vol.47 (20), p.10543-10552 [Periódico revisado por pares]

England: Oxford University Press

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2
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Zhou, Naihui ; Jiang, Yuxiang ; Lee, Alexandra J ; Kacsoh, Balint Z ; Crocker, Alex W ; Georghiou, George ; Nguyen, Huy N ; Hamid, Md Nafiz ; Davis, Larry ; Atalay, Volkan ; Rifaioglu, Ahmet S ; Dalkıran, Alperen ; Cetin Atalay, Rengul ; Zhang, Chengxin ; Hurto, Rebecca L ; Freddolino, Peter L ; Supek, Fran ; Fernández, José M ; Gemovic, Branislava ; Sumonja, Neven ; Veljkovic, Nevena ; Asgari, Ehsaneddin ; Mofrad, Mohammad R K ; Savojardo, Castrense ; Martelli, Pier Luigi ; Casadio, Rita ; Boecker, Florian ; Schoof, Heiko ; Thurlby, Natalie ; McHardy, Alice C ; Renaux, Alexandre ; Saidi, Rabie ; Gough, Julian ; Freitas, Alex A ; Antczak, Magdalena ; Fabris, Fabio ; Wass, Mark N ; Hou, Jie ; Wang, Zheng ; Romero, Alfonso E ; Paccanaro, Alberto ; Yang, Haixuan ; Goldberg, Tatyana ; Zhao, Chenguang ; Holm, Liisa ; Tseng, Wei-Cheng ; Linial, Michal ; Rose, Peter W ; Dessimoz, Christophe ; Dzeroski, Saso ; Sillitoe, Ian ; Das, Sayoni ; Wan, Cen ; Fa, Rui ; Notaro, Marco ; Grossi, Giuliano ; Valentini, Giorgio ; Mesiti, Marco ; Ritchie, David W ; Aridhi, Sabeur ; Bonneau, Richard ; Gligorijević, Vladimir ; Fang, Hai ; Toppo, Stefano ; Falda, Marco ; Berselli, Michele ; Mao, Qizhong ; Black, Gage S ; Suh, Erica ; Dayton, Jonathan B ; Larsen, Dallas J ; Omdahl, Ashton R ; McGuffin, Liam J ; Brackenridge, Danielle A ; Babbitt, Patricia C ; Yunes, Jeffrey M ; Fontana, Paolo ; Zhang, Feng ; Zhu, Shanfeng ; Dai, Suyang ; Yao, Shuwei ; Cao, Renzhi ; Amezola, Miguel ; Johnson, Devon ; Liu, Yi-Wei ; Frank, Yotam ; Hoehndorf, Robert ; Kulmanov, Maxat ; Björne, Jari ; Tolvanen, Martti E E ; Salakoski, Tapio ; Altenhoff, Adrian ; Ben-Hur, Asa ; Rost, Burkhard ; Orengo, Christine A ; Bosco, Giovanni ; Martin, Maria J ; Mooney, Sean D ; Greene, Casey S ; Radivojac, Predrag

Genome Biology, 2019-11, Vol.20 (1), p.244-244, Article 244 [Periódico revisado por pares]

England: BioMed Central

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3
FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
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FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome

Wucher, Valentin ; Legeai, Fabrice ; Hédan, Benoît ; Rizk, Guillaume ; Lagoutte, Lætitia ; Leeb, Tosso ; Jagannathan, Vidhya ; Cadieu, Edouard ; David, Audrey ; Lohi, Hannes ; Cirera, Susanna ; Fredholm, Merete ; Botherel, Nadine ; Leegwater, Peter A J ; Le Béguec, Céline ; Fieten, Hille ; Johnson, Jeremy ; Alföldi, Jessica ; André, Catherine ; Lindblad-Toh, Kerstin ; Hitte, Christophe ; Derrien, Thomas

Nucleic acids research, 2017-05, Vol.45 (8), p.e57-e57 [Periódico revisado por pares]

England: Oxford University Press

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Next-generation transcriptome assembly
Next-generation transcriptome assembly
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Next-generation transcriptome assembly

Martin, Jeffrey A ; Wang, Zhong

Nature reviews. Genetics, 2011-10, Vol.12 (10), p.671-682 [Periódico revisado por pares]

London: Nature Publishing Group

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5
A New Reference Genome Assembly for the Microcrustacean Daphnia pulex
A New Reference Genome Assembly for the Microcrustacean Daphnia pulex
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A New Reference Genome Assembly for the Microcrustacean Daphnia pulex

Ye, Zhiqiang ; Xu, Sen ; Spitze, Ken ; Asselman, Jana ; Jiang, Xiaoqian ; Ackerman, Matthew S ; Lopez, Jacqueline ; Harker, Brent ; Raborn, R Taylor ; Thomas, W Kelley ; Ramsdell, Jordan ; Pfrender, Michael E ; Lynch, Michael

G3 : genes - genomes - genetics, 2017-05, Vol.7 (5), p.1405-1416 [Periódico revisado por pares]

United States: Genetics Society of America

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6
Twelve quick steps for genome assembly and annotation in the classroom
Twelve quick steps for genome assembly and annotation in the classroom
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Twelve quick steps for genome assembly and annotation in the classroom

Jung, Hyungtaek ; Ventura, Tomer ; Chung, J Sook ; Kim, Woo-Jin ; Nam, Bo-Hye ; Kong, Hee Jeong ; Kim, Young-Ok ; Jeon, Min-Seung ; Eyun, Seong-Il Ouellette, Francis

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008325-e1008325 [Periódico revisado por pares]

United States: Public Library of Science

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7
Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies
Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies
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Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies

Platt, 2nd, Roy N ; Blanco-Berdugo, Laura ; Ray, David A

Genome biology and evolution, 2016-02, Vol.8 (2), p.403-410

England: Oxford University Press

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8
Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus
Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus
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Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus

Athanasouli, Marina ; Witte, Hanh ; Weiler, Christian ; Loschko, Tobias ; Eberhardt, Gabi ; Sommer, Ralf J ; Rödelsperger, Christian

BMC genomics, 2020-10, Vol.21 (1), p.708-708, Article 708 [Periódico revisado por pares]

England: BioMed Central Ltd

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9
The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA
The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA
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The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA

Kapranov, Philipp ; St Laurent, Georges ; Raz, Tal ; Ozsolak, Fatih ; Reynolds, C Patrick ; Sorensen, Poul H B ; Reaman, Gregory ; Milos, Patrice ; Arceci, Robert J ; Thompson, John F ; Triche, Timothy J

BMC biology, 2010-12, Vol.8 (1), p.149-149, Article 149 [Periódico revisado por pares]

England: BioMed Central Ltd

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10
Incorporating Gene Annotation into Genomic Prediction of Complex Phenotypes
Incorporating Gene Annotation into Genomic Prediction of Complex Phenotypes
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Incorporating Gene Annotation into Genomic Prediction of Complex Phenotypes

Gao, Ning ; Martini, Johannes W R ; Zhang, Zhe ; Yuan, Xiaolong ; Zhang, Hao ; Simianer, Henner ; Li, Jiaqi

Genetics (Austin), 2017-10, Vol.207 (2), p.489-501 [Periódico revisado por pares]

United States: Genetics Society of America

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