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Refinado por: assunto: Gene Expression Profiling remover
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1
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
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Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

O'Leary, Nuala A ; Wright, Mathew W ; Brister, J Rodney ; Ciufo, Stacy ; Haddad, Diana ; McVeigh, Rich ; Rajput, Bhanu ; Robbertse, Barbara ; Smith-White, Brian ; Ako-Adjei, Danso ; Astashyn, Alexander ; Badretdin, Azat ; Bao, Yiming ; Blinkova, Olga ; Brover, Vyacheslav ; Chetvernin, Vyacheslav ; Choi, Jinna ; Cox, Eric ; Ermolaeva, Olga ; Farrell, Catherine M ; Goldfarb, Tamara ; Gupta, Tripti ; Haft, Daniel ; Hatcher, Eneida ; Hlavina, Wratko ; Joardar, Vinita S ; Kodali, Vamsi K ; Li, Wenjun ; Maglott, Donna ; Masterson, Patrick ; McGarvey, Kelly M ; Murphy, Michael R ; O'Neill, Kathleen ; Pujar, Shashikant ; Rangwala, Sanjida H ; Rausch, Daniel ; Riddick, Lillian D ; Schoch, Conrad ; Shkeda, Andrei ; Storz, Susan S ; Sun, Hanzhen ; Thibaud-Nissen, Francoise ; Tolstoy, Igor ; Tully, Raymond E ; Vatsan, Anjana R ; Wallin, Craig ; Webb, David ; Wu, Wendy ; Landrum, Melissa J ; Kimchi, Avi ; Tatusova, Tatiana ; DiCuccio, Michael ; Kitts, Paul ; Murphy, Terence D ; Pruitt, Kim D

Nucleic acids research, 2016-01, Vol.44 (D1), p.D733-D745 [Periódico revisado por pares]

England: Oxford University Press

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2
Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi
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Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi

Keilwagen, Jens ; Hartung, Frank ; Paulini, Michael ; Twardziok, Sven O ; Grau, Jan

BMC bioinformatics, 2018-05, Vol.19 (1), p.189-189, Article 189 [Periódico revisado por pares]

England: BioMed Central Ltd

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3
A sensitive method for computing GO-based functional similarities among genes with ‘shallow annotation’
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A sensitive method for computing GO-based functional similarities among genes with ‘shallow annotation’

Chen, Xiujie ; Yang, Ruizhi ; Xu, Jiankai ; Ma, Hongzhe ; Chen, Sheng ; Bian, Xiusen ; Liu, Lei

Gene, 2012-11, Vol.509 (1), p.131-135 [Periódico revisado por pares]

Netherlands: Elsevier B.V

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4
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
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Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

Kuleshov, Maxim V ; Jones, Matthew R ; Rouillard, Andrew D ; Fernandez, Nicolas F ; Duan, Qiaonan ; Wang, Zichen ; Koplev, Simon ; Jenkins, Sherry L ; Jagodnik, Kathleen M ; Lachmann, Alexander ; McDermott, Michael G ; Monteiro, Caroline D ; Gundersen, Gregory W ; Ma'ayan, Avi

Nucleic acids research, 2016-07, Vol.44 (W1), p.W90-W97 [Periódico revisado por pares]

England: Oxford University Press

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5
Annotation-free quantification of RNA splicing using LeafCutter
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Annotation-free quantification of RNA splicing using LeafCutter

Li, Yang I ; Knowles, David A ; Humphrey, Jack ; Barbeira, Alvaro N ; Dickinson, Scott P ; Im, Hae Kyung ; Pritchard, Jonathan K

Nature genetics, 2018-01, Vol.50 (1), p.151-158 [Periódico revisado por pares]

United States: Nature Publishing Group

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6
Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations
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Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations

Qin, Peng ; Lu, Hongwei ; Du, Huilong ; Wang, Hao ; Chen, Weilan ; Chen, Zhuo ; He, Qiang ; Ou, Shujun ; Zhang, Hongyu ; Li, Xuanzhao ; Li, Xiuxiu ; Li, Yan ; Liao, Yi ; Gao, Qiang ; Tu, Bin ; Yuan, Hua ; Ma, Bingtian ; Wang, Yuping ; Qian, Yangwen ; Fan, Shijun ; Li, Weitao ; Wang, Jing ; He, Min ; Yin, Junjie ; Li, Ting ; Jiang, Ning ; Chen, Xuewei ; Liang, Chengzhi ; Li, Shigui

Cell, 2021-06, Vol.184 (13), p.3542-3558.e16 [Periódico revisado por pares]

United States: Elsevier Inc

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7
Genome evolution in the allotetraploid frog Xenopus laevis
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Genome evolution in the allotetraploid frog Xenopus laevis

Session, Adam M ; Uno, Yoshinobu ; Kwon, Taejoon ; Chapman, Jarrod A ; Toyoda, Atsushi ; Takahashi, Shuji ; Fukui, Akimasa ; Hikosaka, Akira ; Suzuki, Atsushi ; Kondo, Mariko ; van Heeringen, Simon J ; Quigley, Ian ; Heinz, Sven ; Ogino, Hajime ; Ochi, Haruki ; Hellsten, Uffe ; Lyons, Jessica B ; Simakov, Oleg ; Putnam, Nicholas ; Stites, Jonathan ; Kuroki, Yoko ; Tanaka, Toshiaki ; Michiue, Tatsuo ; Watanabe, Minoru ; Bogdanovic, Ozren ; Lister, Ryan ; Georgiou, Georgios ; Paranjpe, Sarita S ; van Kruijsbergen, Ila ; Shu, Shengquiang ; Carlson, Joseph ; Kinoshita, Tsutomu ; Ohta, Yuko ; Mawaribuchi, Shuuji ; Jenkins, Jerry ; Grimwood, Jane ; Schmutz, Jeremy ; Mitros, Therese ; Mozaffari, Sahar V ; Suzuki, Yutaka ; Haramoto, Yoshikazu ; Yamamoto, Takamasa S ; Takagi, Chiyo ; Heald, Rebecca ; Miller, Kelly ; Haudenschild, Christian ; Kitzman, Jacob ; Nakayama, Takuya ; Izutsu, Yumi ; Robert, Jacques ; Fortriede, Joshua ; Burns, Kevin ; Lotay, Vaneet ; Karimi, Kamran ; Yasuoka, Yuuri ; Dichmann, Darwin S ; Flajnik, Martin F ; Houston, Douglas W ; Shendure, Jay ; DuPasquier, Louis ; Vize, Peter D ; Zorn, Aaron M ; Ito, Michihiko ; Marcotte, Edward M ; Wallingford, John B ; Ito, Yuzuru ; Asashima, Makoto ; Ueno, Naoto ; Matsuda, Yoichi ; Veenstra, Gert Jan C ; Fujiyama, Asao ; Harland, Richard M ; Taira, Masanori ; Rokhsar, Daniel S

Nature (London), 2016-10, Vol.538 (7625), p.336-343 [Periódico revisado por pares]

England: Nature Publishing Group

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8
g:Profiler-a web server for functional interpretation of gene lists (2016 update)
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g:Profiler-a web server for functional interpretation of gene lists (2016 update)

Reimand, Jüri ; Arak, Tambet ; Adler, Priit ; Kolberg, Liis ; Reisberg, Sulev ; Peterson, Hedi ; Vilo, Jaak

Nucleic acids research, 2016-07, Vol.44 (W1), p.W83-W89 [Periódico revisado por pares]

England: Oxford University Press

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9
Microbial abundance, activity and population genomic profiling with mOTUs2
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Microbial abundance, activity and population genomic profiling with mOTUs2

Milanese, Alessio ; Mende, Daniel R ; Paoli, Lucas ; Salazar, Guillem ; Ruscheweyh, Hans-Joachim ; Cuenca, Miguelangel ; Hingamp, Pascal ; Alves, Renato ; Costea, Paul I ; Coelho, Luis Pedro ; Schmidt, Thomas S B ; Almeida, Alexandre ; Mitchell, Alex L ; Finn, Robert D ; Huerta-Cepas, Jaime ; Bork, Peer ; Zeller, Georg ; Sunagawa, Shinichi

Nature communications, 2019-03, Vol.10 (1), p.1014-1014, Article 1014 [Periódico revisado por pares]

England: Nature Publishing Group

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10
NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants
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NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants

Zhao, Lianhe ; Wang, Jiajia ; Li, Yanyan ; Song, Tingrui ; Wu, Yang ; Fang, Shuangsang ; Bu, Dechao ; Li, Hui ; Sun, Liang ; Pei, Dong ; Zheng, Yu ; Huang, Jianqin ; Xu, Mingqing ; Chen, Runsheng ; Zhao, Yi ; He, Shunmin

Nucleic acids research, 2021-01, Vol.49 (D1), p.D165-D171 [Periódico revisado por pares]

England: Oxford University Press

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