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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Afgan, Enis ; Nekrutenko, Anton ; Grüning, Bjórn A ; Blankenberg, Daniel ; Goecks, Jeremy ; Schatz, Michael C ; Ostrovsky, Alexander E ; Mahmoud, Alexandru ; Lonie, Andrew J ; Syme, Anna ; Bretaudeau, Anthony ; Kumar, Anup ; Eschenlauer, Arthur C ; DeSanto, Assunta D ; Guerler, Aysam ; Serrano-Solano, Beatriz ; Batut, Bérénice ; Grüning, Björn A ; Langhorst, Bradley W ; Carr, Bridget ; Raubenolt, Bryan A ; Hyde, Cameron J ; Bromhead, Catherine J ; Barnett, Christopher B ; Royaux, Coline ; Gallardo, Cristóbal ; Fornika, Daniel J ; Baker, Dannon ; Bouvier, Dave ; Clements, Dave ; de Lima Morais, David A ; Tabernero, David Lopez ; Lariviere, Delphine ; Nasr, Engy ; Zambelli, Federico ; Heyl, Florian ; Psomopoulos, Fotis ; Coppens, Frederik ; Price, Gareth R ; Cuccuru, Gianmauro ; Corguillé, Gildas Le ; Von Kuster, Greg ; Akbulut, Gulsum Gudukbay ; Rasche, Helena ; Hotz, Hans-Rudolf ; Eguinoa, Ignacio ; Makunin, Igor ; Ranawaka, Isuru J ; Taylor, James P ; Joshi, Jayadev ; Hillman-Jackson, Jennifer ; Chilton, John M ; Kamali, Kaivan ; Suderman, Keith ; Poterlowicz, Krzysztof ; Yvan, Le Bras ; Lopez-Delisle, Lucille ; Sargent, Luke ; Bassetti, Madeline E ; Tangaro, Marco Antonio ; van den Beek, Marius ; Čech, Martin ; Bernt, Matthias ; Fahrner, Matthias ; Tekman, Mehmet ; Föll, Melanie C ; Crusoe, Michael R ; Roncoroni, Miguel ; Kucher, Natalie ; Coraor, Nate ; Stoler, Nicholas ; Rhodes, Nick ; Soranzo, Nicola ; Pinter, Niko ; Goonasekera, Nuwan A ; Moreno, Pablo A ; Videm, Pavankumar ; Melanie, Petera ; Mandreoli, Pietro ; Jagtap, Pratik D ; Gu, Qiang ; Weber, Ralf J M ; Lazarus, Ross ; Vorderman, Ruben H P ; Hiltemann, Saskia ; Golitsynskiy, Sergey ; Garg, Shilpa ; Bray, Simon A ; Gladman, Simon L ; Leo, Simone ; Mehta, Subina P ; Griffin, Timothy J ; Jalili, Vahid ; Yves, Vandenbrouck ; Wen, Victor ; Nagampalli, Vijay K ; Bacon, Wendi A ; de Koning, Willem ; Maier, Wolfgang ; Briggs, Peter J

Nucleic acids research, 2022-07, Vol.50 (W1), p.W345-W351 [Periódico revisado por pares]

England: Oxford University Press

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2
JASPAR 2020: update of the open-access database of transcription factor binding profiles
JASPAR 2020: update of the open-access database of transcription factor binding profiles
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JASPAR 2020: update of the open-access database of transcription factor binding profiles

Fornes, Oriol ; Castro-Mondragon, Jaime A ; Khan, Aziz ; van der Lee, Robin ; Zhang, Xi ; Richmond, Phillip A ; Modi, Bhavi P ; Correard, Solenne ; Gheorghe, Marius ; Baranašić, Damir ; Santana-Garcia, Walter ; Tan, Ge ; Chèneby, Jeanne ; Ballester, Benoit ; Parcy, François ; Sandelin, Albin ; Lenhard, Boris ; Wasserman, Wyeth W ; Mathelier, Anthony

Nucleic acids research, 2020-01, Vol.48 (D1), p.D87-D92 [Periódico revisado por pares]

England: Oxford University Press

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3
Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series
Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series
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Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series

Fages, Antoine ; Hanghøj, Kristian ; Khan, Naveed ; Gaunitz, Charleen ; Seguin-Orlando, Andaine ; Leonardi, Michela ; McCrory Constantz, Christian ; Gamba, Cristina ; Al-Rasheid, Khaled A.S. ; Allentoft, Morten ; Anthony, David ; Baimukhanov, Nurbol ; Barrett, James H. ; Bayarsaikhan, Jamsranjav ; Benecke, Norbert ; Bernáldez-Sánchez, Eloísa ; Berrocal-Rangel, Luis ; Boldgiv, Bazartseren ; Brem, Gottfried ; Brown, Dorcas ; Burger, Joachim ; Crubézy, Eric ; Daugnora, Linas ; Davoudi, Hossein ; de Barros Damgaard, Peter ; de los Ángeles de Chorro y de Villa-Ceballos, María ; Deschler-Erb, Sabine ; Detry, Cleia ; Dill, Nadine ; do Mar Oom, Maria ; Dohr, Anna ; Ellingvåg, Sturla ; Erdenebaatar, Diimaajav ; Fathi, Homa ; Fernández-Rodríguez, Carlos ; García-Viñas, Esteban ; Germonpré, Mietje ; Granado, José D. ; Hallsson, Jón H. ; Hemmer, Helmut ; Hofreiter, Michael ; Kasparov, Aleksei ; Khasanov, Mutalib ; Khazaeli, Roya ; Kosintsev, Pavel ; Kubatbek, Tabaldiev ; Kuderna, Lukas ; Laleh, Haeedeh ; Lhuillier, Johanna ; Logvin, Andrey ; Lõugas, Lembi ; Ludwig, Arne ; Marques-Bonet, Tomas ; Matoso Silva, Raquel ; Merz, Victor ; Miller, Bryan K. ; Monchalov, Oleg ; Morales, Arturo ; Nistelberger, Heidi ; Onar, Vedat ; Pálsdóttir, Albína H. ; Pitulko, Vladimir ; Pitskhelauri, Konstantin ; Pruvost, Mélanie ; Rajic Sikanjic, Petra ; Rapan Papeša, Anita ; Roslyakova, Natalia ; Sardari, Alireza ; Sauer, Eberhard ; Schafberg, Renate ; Scheu, Amelie ; Schibler, Jörg ; Schlumbaum, Angela ; Shapiro, Beth ; Sheikhi Seno, Shiva ; Shevnina, Irina ; Southon, John ; Star, Bastiaan ; Sykes, Naomi ; Teegen, Wolf-Rüdiger ; Trbojević Vukičević, Tajana ; Trixl, Simon ; Tumen, Dashzeveg ; Undrakhbold, Sainbileg ; Usmanova, Emma ; Vahdati, Ali ; Valenzuela-Lamas, Silvia ; Viegas, Catarina ; Wallner, Barbara ; Weinstock, Jaco ; Zaibert, Victor ; Clavel, Benoit ; Lepetz, Sébastien ; Mashkour, Marjan ; Helgason, Agnar ; Stefánsson, Kári ; Willerslev, Eske ; Outram, Alan K. ; Librado, Pablo ; Orlando, Ludovic

Cell, 2019-05, Vol.177 (6), p.1419-1435.e31 [Periódico revisado por pares]

United States: Elsevier Inc

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4
A critical spotlight on the paradigms of FFPE-DNA sequencing
A critical spotlight on the paradigms of FFPE-DNA sequencing
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A critical spotlight on the paradigms of FFPE-DNA sequencing

Steiert, Tim A ; Parra, Genís ; Gut, Marta ; Arnold, Norbert ; Trotta, Jean-Rémi ; Tonda, Raúl ; Moussy, Alice ; Gerber, Zuzana ; Abuja, Peter M ; Zatloukal, Kurt ; Röcken, Christoph ; Folseraas, Trine ; Grimsrud, Marit M ; Vogel, Arndt ; Goeppert, Benjamin ; Roessler, Stephanie ; Hinz, Sebastian ; Schafmayer, Clemens ; Rosenstiel, Philip ; Deleuze, Jean-François ; Gut, Ivo G ; Franke, Andre ; Forster, Michael

Nucleic acids research, 2023-08, Vol.51 (14), p.7143-7162 [Periódico revisado por pares]

England: Oxford University Press

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5
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles
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JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

Rauluseviciute, Ieva ; Riudavets-Puig, Rafael ; Blanc-Mathieu, Romain ; Castro-Mondragon, Jaime A ; Ferenc, Katalin ; Kumar, Vipin ; Lemma, Roza Berhanu ; Lucas, Jérémy ; Chèneby, Jeanne ; Baranasic, Damir ; Khan, Aziz ; Fornes, Oriol ; Gundersen, Sveinung ; Johansen, Morten ; Hovig, Eivind ; Lenhard, Boris ; Sandelin, Albin ; Wasserman, Wyeth W ; Parcy, François ; Mathelier, Anthony

Nucleic acids research, 2024-01, Vol.52 (D1), p.D174-D182 [Periódico revisado por pares]

England: Oxford University Press

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6
Silencing of STE20‐type kinase MST3 in mice with antisense oligonucleotide treatment ameliorates diet‐induced nonalcoholic fatty liver disease
Silencing of STE20‐type kinase MST3 in mice with antisense oligonucleotide treatment ameliorates diet‐induced nonalcoholic fatty liver disease
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Silencing of STE20‐type kinase MST3 in mice with antisense oligonucleotide treatment ameliorates diet‐induced nonalcoholic fatty liver disease

Caputo, Mara ; Kurhe, Yeshwant ; Kumari, Sima ; Cansby, Emmelie ; Amrutkar, Manoj ; Scandalis, Eli ; Booten, Sheri L. ; Ståhlman, Marcus ; Borén, Jan ; Marschall, Hanns‐Ulrich ; Aghajan, Mariam ; Mahlapuu, Margit

The FASEB journal, 2021-05, Vol.35 (5), p.e21567-n/a [Periódico revisado por pares]

United States

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7
A map of direct TF-DNA interactions in the human genome
A map of direct TF-DNA interactions in the human genome
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A map of direct TF-DNA interactions in the human genome

Gheorghe, Marius ; Sandve, Geir Kjetil ; Khan, Aziz ; Chèneby, Jeanne ; Ballester, Benoit ; Mathelier, Anthony

Nucleic acids research, 2019-02, Vol.47 (4), p.e21-e21 [Periódico revisado por pares]

England: Oxford University Press

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8
Waves of sumoylation support transcription dynamics during adipocyte differentiation
Waves of sumoylation support transcription dynamics during adipocyte differentiation
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Waves of sumoylation support transcription dynamics during adipocyte differentiation

Zhao, Xu ; Hendriks, Ivo A ; Le Gras, Stéphanie ; Ye, Tao ; Ramos-Alonso, Lucía ; Nguéa P, Aurélie ; Lien, Guro Flor ; Ghasemi, Fatemeh ; Klungland, Arne ; Jost, Bernard ; Enserink, Jorrit M ; Nielsen, Michael L ; Chymkowitch, Pierre

Nucleic acids research, 2022-02, Vol.50 (3), p.1351-1369 [Periódico revisado por pares]

England: Oxford University Press

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9
SynergyFinder 2.0: visual analytics of multi-drug combination synergies
SynergyFinder 2.0: visual analytics of multi-drug combination synergies
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SynergyFinder 2.0: visual analytics of multi-drug combination synergies

Ianevski, Aleksandr ; Giri, Anil K ; Aittokallio, Tero

Nucleic acids research, 2020-07, Vol.48 (W1), p.W488-W493 [Periódico revisado por pares]

England: Oxford University Press

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10
A poly‐proline II helix in YadA from Yersinia enterocolitica serotype O:9 facilitates heparin binding through electrostatic interactions
A poly‐proline II helix in YadA from Yersinia enterocolitica serotype O:9 facilitates heparin binding through electrostatic interactions
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A poly‐proline II helix in YadA from Yersinia enterocolitica serotype O:9 facilitates heparin binding through electrostatic interactions

Meuskens, Ina ; Kristiansen, Per Eugen ; Bardiaux, Benjamin ; Koynarev, Vladimir Rosenov ; Hatlem, Daniel ; Prydz, Kristian ; Lund, Reidar ; Izadi‐Pruneyre, Nadia ; Linke, Dirk

The FEBS journal, 2024-02, Vol.291 (4), p.761-777 [Periódico revisado por pares]

England: Blackwell Publishing Ltd

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