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A high-performance computing toolset for relatedness and principal component analysis of SNP dataXIUWEN ZHENG ; LEVINE, David ; SHEN, Jess ; GOGARTEN, Stephanie M ; LAURIE, Cathy ; WEIR, Bruce SBioinformatics, 2012-12, Vol.28 (24), p.3326-3328 [Periódico revisado por pares]Oxford: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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FLASH: fast length adjustment of short reads to improve genome assembliesMago, Tanja ; Salzberg, Steven LBioinformatics, 2011-11, Vol.27 (21), p.2957-2963 [Periódico revisado por pares]Oxford: Oxford University PressTexto completo disponível |
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The sva package for removing batch effects and other unwanted variation in high-throughput experimentsLEEK, Jeffrey T ; EVAN JOHNSON, W ; PARKER, Hilary S ; JAFFE, Andrew E ; STOREY, John DBioinformatics (Oxford, England), 2012-03, Vol.28 (6), p.882-883 [Periódico revisado por pares]Oxford: Oxford University PressTexto completo disponível |
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The variant call format and VCFtoolsDanecek, Petr ; Auton, Adam ; Abecasis, Goncalo ; Albers, Cornelis A ; Banks, Eric ; DePristo, Mark A ; Handsaker, Robert E ; Lunter, Gerton ; Marth, Gabor T ; Sherry, Stephen T ; McVean, Gilean ; Durbin, RichardBioinformatics, 2011-08, Vol.27 (15), p.2156-2158 [Periódico revisado por pares]Oxford: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Strelka: accurate somatic small-variant calling from sequenced tumor―normal sample pairsSAUNDERS, Christopher T ; WONG, Wendy S. W ; SWAMY, Sajani ; BECQ, Jennifer ; MURRAY, Lisa J ; CHEETHAM, R. KeiraBioinformatics, 2012-07, Vol.28 (14), p.1811-1817 [Periódico revisado por pares]Oxford: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Matrix eQTL: ultra fast eQTL analysis via large matrix operationsSHABALIN, Andrey ABioinformatics (Oxford, England), 2012-05, Vol.28 (10), p.1353-1358 [Periódico revisado por pares]Oxford: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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ART: a next-generation sequencing read simulatorHuang, Weichun ; Li, Leping ; Myers, Jason R ; Marth, Gabor TBioinformatics, 2012-02, Vol.28 (4), p.593-594 [Periódico revisado por pares]Oxford: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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MissForest-non-parametric missing value imputation for mixed-type dataStekhoven, Daniel J ; Bühlmann, PeterBioinformatics, 2012-01, Vol.28 (1), p.112-118 [Periódico revisado por pares]Oxford: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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GAPIT: genome association and prediction integrated toolLIPKA, Alexander E ; FENG TIAN ; WANG, Oishan ; PEIFFER, Jason ; MENG LI ; BRADBURY, Peter J ; GORE, Michael A ; BUCKLER, Edward S ; ZHIWU ZHANGBioinformatics, 2012-09, Vol.28 (18), p.2397-2399 [Periódico revisado por pares]Oxford: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Qualimap: evaluating next-generation sequencing alignment dataGARCIA-ALCALDE, Fernando ; OKONECHNIKOV, Konstantin ; CARBONELL, Jose ; CRUZ, Luis M ; GÖTZ, Stefan ; TARAZONA, Sonia ; DOPAZO, Joaquín ; MEYER, Thomas F ; CONESA, AnaBioinformatics (Oxford, England), 2012-10, Vol.28 (20), p.2678-2679 [Periódico revisado por pares]Oxford: Oxford University PressTexto completo disponível |