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An end-to-end workflow for multiplexed image processing and analysis
An end-to-end workflow for multiplexed image processing and analysis
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An end-to-end workflow for multiplexed image processing and analysis

Windhager, Jonas ; Zanotelli, Vito Riccardo Tomaso ; Schulz, Daniel ; Meyer, Lasse ; Daniel, Michelle ; Bodenmiller, Bernd ; Eling, Nils

Nature protocols, 2023-11, Vol.18 (11), p.3565-3613 [Periódico revisado por pares]

London: Nature Publishing Group

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HTSplotter: An end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening
HTSplotter: An end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening
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HTSplotter: An end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening

Nunes, Carolina ; Anckaert, Jasper ; De Vloed, Fanny ; De Wyn, Jolien ; Durinck, Kaat ; Vandesompele, Jo ; Speleman, Frank ; Vermeirssen, Vanessa Jayaprakash, Naveen

PloS one, 2024-01, Vol.19 (1), p.e0296322-e0296322 [Periódico revisado por pares]

United States: Public Library of Science

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OPTIMAL: An OPTimized Imaging Mass cytometry AnaLysis framework for benchmarking segmentation and data exploration
OPTIMAL: An OPTimized Imaging Mass cytometry AnaLysis framework for benchmarking segmentation and data exploration
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OPTIMAL: An OPTimized Imaging Mass cytometry AnaLysis framework for benchmarking segmentation and data exploration

Hunter, Bethany ; Nicorescu, Ioana ; Foster, Emma ; McDonald, David ; Hulme, Gillian ; Fuller, Andrew ; Thomson, Amanda ; Goldsborough, Thibaut ; Hilkens, Catharien M. U. ; Majo, Joaquim ; Milross, Luke ; Fisher, Andrew ; Bankhead, Peter ; Wills, John ; Rees, Paul ; Filby, Andrew ; Merces, George

Cytometry. Part A, 2024-01, Vol.105 (1), p.36-53 [Periódico revisado por pares]

Hoboken, USA: John Wiley & Sons, Inc

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4
kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models
kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models
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kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models

Carretero Chavez, Willow ; Krantz, Marcus ; Klipp, Edda ; Kufareva, Irina

BMC bioinformatics, 2023-06, Vol.24 (1), p.246-246, Article 246 [Periódico revisado por pares]

England: BioMed Central Ltd

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5
Identifying the landscape of developmental toxicity new approach methodologies
Identifying the landscape of developmental toxicity new approach methodologies
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Identifying the landscape of developmental toxicity new approach methodologies

Becker, Richard A. ; Bianchi, Enrica ; LaRocca, Jessica ; Marty, Mary Sue ; Mehta, Vatsal

Birth defects research, 2022-10, Vol.114 (17), p.1123-1137 [Periódico revisado por pares]

Hoboken, USA: John Wiley & Sons, Inc

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6
Cell-free DNA in spent culture medium effectively reflects the chromosomal status of embryos following culturing beyond implantation compared to trophectoderm biopsy
Cell-free DNA in spent culture medium effectively reflects the chromosomal status of embryos following culturing beyond implantation compared to trophectoderm biopsy
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Cell-free DNA in spent culture medium effectively reflects the chromosomal status of embryos following culturing beyond implantation compared to trophectoderm biopsy

Shitara, Akihiro ; Takahashi, Kazumasa ; Goto, Mayumi ; Takahashi, Harunori ; Iwasawa, Takuya ; Onodera, Yohei ; Makino, Kenichi ; Miura, Hiroshi ; Shirasawa, Hiromitsu ; Sato, Wataru ; Kumazawa, Yukiyo ; Terada, Yukihiro Wrenzycki, Christine

PloS one, 2021-02, Vol.16 (2), p.e0246438-e0246438 [Periódico revisado por pares]

United States: Public Library of Science

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7
Impact of Na+ permeation on collective migration of pulmonary arterial endothelial cells
Impact of Na+ permeation on collective migration of pulmonary arterial endothelial cells
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Impact of Na+ permeation on collective migration of pulmonary arterial endothelial cells

Xu, Ningyong ; Ayers, Linn ; Pastukh, Viktoriya ; Alexeyev, Mikhail ; Stevens, Troy ; Tambe, Dhananjay T Obukhov, Alexander G

PloS one, 2021-01, Vol.16 (4), p.e0250095-e0250095 [Periódico revisado por pares]

United States: Public Library of Science

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8
LINC00958 promotes proliferation, migration, invasion, and epithelial-mesenchymal transition of oesophageal squamous cell carcinoma cells
LINC00958 promotes proliferation, migration, invasion, and epithelial-mesenchymal transition of oesophageal squamous cell carcinoma cells
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LINC00958 promotes proliferation, migration, invasion, and epithelial-mesenchymal transition of oesophageal squamous cell carcinoma cells

Wang, Biqi ; Tang, Duo ; Liu, Zijia ; Wang, Qian ; Xue, Shan ; Zhao, Zijie ; Feng, Dongdong ; Sheng, Chao ; Li, Jintao ; Zhou, Zhixiang Andl, Claudia D.

PloS one, 2021-05, Vol.16 (5), p.e0251797 [Periódico revisado por pares]

United States: Public Library of Science

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9
Biochemical and phylogenetic characterization of the wastewater tolerant Chlamydomonas biconvexa Embrapa|LBA40 strain cultivated in palm oil mill effluent
Biochemical and phylogenetic characterization of the wastewater tolerant Chlamydomonas biconvexa Embrapa|LBA40 strain cultivated in palm oil mill effluent
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Biochemical and phylogenetic characterization of the wastewater tolerant Chlamydomonas biconvexa Embrapa|LBA40 strain cultivated in palm oil mill effluent

Pascoal, Patrícia Verdugo ; Ribeiro, Dágon Manoel ; Cereijo, Carolina Ribeiro ; Santana, Hugo ; Nascimento, Rodrigo Carvalho ; Steindorf, Andrei Stecca ; Calsing, Lorena C G ; Formighieri, Eduardo Fernandes ; Brasil, Bruno S A F Srinivasan, Balamurugan

PloS one, 2021-04, Vol.16 (4), p.e0249089 [Periódico revisado por pares]

United States: Public Library of Science

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10
A stealth adhesion factor contributes to Vibrio vulnificus pathogenicity: Flp pili play roles in host invasion, survival in the blood stream and resistance to complement activation
A stealth adhesion factor contributes to Vibrio vulnificus pathogenicity: Flp pili play roles in host invasion, survival in the blood stream and resistance to complement activation
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A stealth adhesion factor contributes to Vibrio vulnificus pathogenicity: Flp pili play roles in host invasion, survival in the blood stream and resistance to complement activation

Duong-Nu, Tra-My ; Jeong, Kwangjoon ; Hong, Seol Hee ; Puth, Sao ; Kim, Soo Young ; Tan, Wenzhi ; Lee, Kwang Ho ; Lee, Shee Eun ; Rhee, Joon Haeng Baumler, Andreas J

PLoS pathogens, 2019-08, Vol.15 (8), p.e1007767 [Periódico revisado por pares]

United States: Public Library of Science

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