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Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0
Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0
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Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0

Granger, Brian R ; Chang, Yi-Chien ; Wang, Yan ; DeLisi, Charles ; Segrè, Daniel ; Hu, Zhenjun Prlic, Andreas

PLoS computational biology, 2016-04, Vol.12 (4), p.e1004875-e1004875 [Periódico revisado por pares]

United States: Public Library of Science

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2
Deep sequencing of the oral microbiome reveals signatures of periodontal disease
Deep sequencing of the oral microbiome reveals signatures of periodontal disease
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Deep sequencing of the oral microbiome reveals signatures of periodontal disease

Liu, Bo ; Faller, Lina L ; Klitgord, Niels ; Mazumdar, Varun ; Ghodsi, Mohammad ; Sommer, Daniel D ; Gibbons, Theodore R ; Treangen, Todd J ; Chang, Yi-Chien ; Li, Shan ; Stine, O Colin ; Hasturk, Hatice ; Kasif, Simon ; Segrè, Daniel ; Pop, Mihai ; Amar, Salomon Highlander, Sarah K.

PloS one, 2012-06, Vol.7 (6), p.e37919 [Periódico revisado por pares]

United States: Public Library of Science

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3
Exploiting the GTEx resources to decipher the mechanisms at GWAS loci
Exploiting the GTEx resources to decipher the mechanisms at GWAS loci
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Exploiting the GTEx resources to decipher the mechanisms at GWAS loci

Barbeira, Alvaro N ; Bonazzola, Rodrigo ; Gamazon, Eric R ; Liang, Yanyu ; Park, YoSon ; Kim-Hellmuth, Sarah ; Wang, Gao ; Jiang, Zhuoxun ; Zhou, Dan ; Hormozdiari, Farhad ; Liu, Boxiang ; Rao, Abhiram ; Hamel, Andrew R ; Pividori, Milton D ; Aguet, François ; Bastarache, Lisa ; Jordan, Daniel M ; Verbanck, Marie ; Do, Ron ; Stephens, Matthew ; Ardlie, Kristin ; McCarthy, Mark ; Montgomery, Stephen B ; Segrè, Ayellet V ; Brown, Christopher D ; Lappalainen, Tuuli ; Wen, Xiaoquan ; Im, Hae Kyung

Genome Biology, 2021-01, Vol.22 (1), p.49-49, Article 49 [Periódico revisado por pares]

England: BioMed Central

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4
Interaction between the microbiome and TP53 in human lung cancer
Interaction between the microbiome and TP53 in human lung cancer
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Interaction between the microbiome and TP53 in human lung cancer

Greathouse, K Leigh ; White, James R ; Vargas, Ashely J ; Bliskovsky, Valery V ; Beck, Jessica A ; von Muhlinen, Natalia ; Polley, Eric C ; Bowman, Elise D ; Khan, Mohammed A ; Robles, Ana I ; Cooks, Tomer ; Ryan, Bríd M ; Padgett, Noah ; Dzutsev, Amiran H ; Trinchieri, Giorgio ; Pineda, Marbin A ; Bilke, Sven ; Meltzer, Paul S ; Hokenstad, Alexis N ; Stickrod, Tricia M ; Walther-Antonio, Marina R ; Earl, Joshua P ; Mell, Joshua C ; Krol, Jaroslaw E ; Balashov, Sergey V ; Bhat, Archana S ; Ehrlich, Garth D ; Valm, Alex ; Deming, Clayton ; Conlan, Sean ; Oh, Julia ; Segre, Julie A ; Harris, Curtis C

Genome Biology, 2018-08, Vol.19 (1), p.123-16, Article 123 [Periódico revisado por pares]

England: BioMed Central

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5
Species-level analysis of DNA sequence data from the NIH Human Microbiome Project
Species-level analysis of DNA sequence data from the NIH Human Microbiome Project
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Species-level analysis of DNA sequence data from the NIH Human Microbiome Project

Conlan, Sean ; Kong, Heidi H ; Segre, Julia A Highlander, Sarah K.

PloS one, 2012-10, Vol.7 (10), p.e47075-e47075 [Periódico revisado por pares]

United States: Public Library of Science

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6
Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates
Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates
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Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates

Conlan, Sean ; Mijares, Lilia A ; Becker, Jesse ; Blakesley, Robert W ; Bouffard, Gerard G ; Brooks, Shelise ; Coleman, Holly ; Gupta, Jyoti ; Gurson, Natalie ; Park, Morgan ; Schmidt, Brian ; Thomas, Pamela J ; Otto, Michael ; Kong, Heidi H ; Murray, Patrick R ; Segre, Julia A

Genome biology, 2012-07, Vol.13 (7), p.R64-R64 [Periódico revisado por pares]

England: Springer-Verlag

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7
Genome-wide recombination drives diversification of epidemic strains of Acinetobacter baumannii
Genome-wide recombination drives diversification of epidemic strains of Acinetobacter baumannii
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Genome-wide recombination drives diversification of epidemic strains of Acinetobacter baumannii

Snitkin, Evan S. ; Zelazny, Adrian M. ; Montero, Clemente I. ; Stock, Frida ; Mijares, Lilia ; Murray, Patrick R. ; Segre, Julie A.

Proceedings of the National Academy of Sciences - PNAS, 2011-08, Vol.108 (33), p.13758-13763 [Periódico revisado por pares]

United States: National Academy of Sciences

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8
Effect of predicted protein-truncating genetic variants on the human transcriptome
Effect of predicted protein-truncating genetic variants on the human transcriptome
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Effect of predicted protein-truncating genetic variants on the human transcriptome

Rivas, Manuel A. ; Pirinen, Matti ; Conrad, Donald F. ; Lek, Monkol ; Tsang, Emily K. ; Karczewski, Konrad J. ; Maller, Julian B. ; Kukurba, Kimberly R. ; DeLuca, David S. ; Fromer, Menachem ; Ferreira, Pedro G. ; Smith, Kevin S. ; Zhang, Rui ; Zhao, Fengmei ; Banks, Eric ; Poplin, Ryan ; Ruderfer, Douglas M. ; Purcell, Shaun M. ; Tukiainen, Taru ; Minikel, Eric V. ; Stenson, Peter D. ; Cooper, David N. ; Huang, Katharine H. ; Sullivan, Timothy J. ; Nedzel, Jared ; Bustamante, Carlos D. ; Li, Jin Billy ; Daly, Mark J. ; Guigo, Roderic ; Donnelly, Peter ; Ardlie, Kristin ; Sammeth, Michael ; Dermitzakis, Emmanouil T. ; McCarthy, Mark I. ; Montgomery, Stephen B. ; Lappalainen, Tuuli ; MacArthur, Daniel G.

Science (American Association for the Advancement of Science), 2015-05, Vol.348 (6235), p.666-669 [Periódico revisado por pares]

Washington: American Association for the Advancement of Science

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9
Effect of Oxygen on Biochemical Networks and the Evolution of Complex Life
Effect of Oxygen on Biochemical Networks and the Evolution of Complex Life
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Effect of Oxygen on Biochemical Networks and the Evolution of Complex Life

Raymond, Jason ; Segrè, Daniel

Science (American Association for the Advancement of Science), 2006-03, Vol.311 (5768), p.1764-1767 [Periódico revisado por pares]

Washington, DC: American Association for the Advancement of Science

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10
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes
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COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

Roberts, Richard J ; Chang, Yi-Chien ; Hu, Zhenjun ; Rachlin, John N ; Anton, Brian P ; Pokrzywa, Revonda M ; Choi, Han-Pil ; Faller, Lina L ; Guleria, Jyotsna ; Housman, Genevieve ; Klitgord, Niels ; Mazumdar, Varun ; McGettrick, Mark G ; Osmani, Lais ; Swaminathan, Rajeswari ; Tao, Kevin R ; Letovsky, Stan ; Vitkup, Dennis ; Segrè, Daniel ; Salzberg, Steven L ; Delisi, Charles ; Steffen, Martin ; Kasif, Simon

Nucleic acids research, 2011-01, Vol.39 (Database issue), p.D11-D14 [Periódico revisado por pares]

England: Oxford University Press

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