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Supervised classification enables rapid annotation of cell atlases
Supervised classification enables rapid annotation of cell atlases
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Supervised classification enables rapid annotation of cell atlases

Pliner, Hannah A ; Shendure, Jay ; Trapnell, Cole

Nature methods, 2019-10, Vol.16 (10), p.983-986 [Periódico revisado por pares]

United States: Nature Publishing Group

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2
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
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The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

Jones, Robert C ; Pisco, Angela Oliveira ; Quake, Stephen R ; Bulthaup, Bryan ; Brown, Phillip ; Harper, William ; Hemenez, Marisa ; Ponnusamy, Ravikumar ; Sanagavarapu, Bhavani A ; Spallino, Eileen ; Aaron, Ksenia A ; Concepcion, Waldo ; Gardner, James M ; Neidlinger, Nikole ; Wang, Zifa ; Crasta, Sheela ; Tan, Serena Y ; Travaglini, Kyle J ; Burhan, Deviana ; Calcuttawala, Kruti ; Carter, Matthew M ; Chan, Charles K F ; Chang, Charles A ; Culver, Rebecca N ; Cvijović, Ivana ; D'Amato, Gaetano ; Galdos, Francisco X ; Goodyer, William R ; Hang, Yan ; Hayashi, Alyssa ; Houshdaran, Sahar ; Huang, Xianxi ; Jang, SoRi ; Kershner, Aaron M ; Kim, Soochi ; Kuo, Angera H ; Li, Baoxiang ; Loeb, Gabriel B ; Markovic, Maxim ; de Morree, Antoine ; Mrouj, Karim ; Mukherjee, Shravani ; Muser, Tyler ; Neuhöfer, Patrick ; Nguyen, Thi D ; Perez, Kimberly ; Rao, Poorvi ; Schaum, Nicholas ; Scott, Bronwyn ; Seddighzadeh, Bobak ; Segal, Joe ; Sen, Sushmita ; Sikandar, Shaheen ; Swarup, Aditi ; Veizades, Stefan ; Vo, Kim Chi ; Wang, Wanxin ; Winkler, Juliane ; Yung, Andrea R ; Detweiler, Angela M ; Mekonen, Honey ; Neff, Norma F ; Sit, Rene V ; Yan, Jia ; Bean, Gregory R ; Charu, Vivek ; Ozawa, Michael G ; Silva, Oscar ; Toland, Angus ; Afik, Shaked ; Byrne, Ashley ; Chen, Michelle ; Li, Qiqing ; McGeever, Aaron ; Park, Madeline ; Tan, Weilun ; Tarashansky, Alexander J ; Wang, Sheng ; Xing, Galen ; Dethlefsen, Les ; Ho, Po-Yi ; Liu, Shixuan ; Maltzman, Jonathan S ; Metzger, Ross J ; Sasagawa, Koki ; Sinha, Rahul ; Song, Hanbing ; Wang, Bruce ; Beachy, Philip A ; Clarke, Michael F ; Huang, Franklin W ; Huang, Kerwyn Casey ; Idoyaga, Juliana ; Kuo, Christin S ; Rando, Thomas A ; Red-Horse, Kristy ; Reiter, Jeremy ; Relman, David A ; Sonnenburg, Justin L ; Wyss-Coray, Tony

Science (American Association for the Advancement of Science), 2022-05, Vol.376 (6594), p.eabl4896-eabl4896 [Periódico revisado por pares]

United States: The American Association for the Advancement of Science

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3
A global atlas of the dominant bacteria found in soil
A global atlas of the dominant bacteria found in soil
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A global atlas of the dominant bacteria found in soil

Delgado-Baquerizo, Manuel ; Oliverio, Angela M ; Brewer, Tess E ; Benavent-González, Alberto ; Eldridge, David J ; Bardgett, Richard D ; Maestre, Fernando T ; Singh, Brajesh K ; Fierer, Noah

Science (American Association for the Advancement of Science), 2018-01, Vol.359 (6373), p.320-325 [Periódico revisado por pares]

United States: The American Association for the Advancement of Science

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4
Embryo-scale, single-cell spatial transcriptomics
Embryo-scale, single-cell spatial transcriptomics
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Embryo-scale, single-cell spatial transcriptomics

Srivatsan, Sanjay R ; Regier, Mary C ; Barkan, Eliza ; Franks, Jennifer M ; Packer, Jonathan S ; Grosjean, Parker ; Duran, Madeleine ; Saxton, Sarah ; Ladd, Jon J ; Spielmann, Malte ; Lois, Carlos ; Lampe, Paul D ; Shendure, Jay ; Stevens, Kelly R ; Trapnell, Cole

Science (American Association for the Advancement of Science), 2021-07, Vol.373 (6550), p.111-117 [Periódico revisado por pares]

United States: The American Association for the Advancement of Science

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5
A human cell atlas of fetal gene expression
A human cell atlas of fetal gene expression
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A human cell atlas of fetal gene expression

Cao, Junyue ; O'Day, Diana R ; Pliner, Hannah A ; Kingsley, Paul D ; Deng, Mei ; Daza, Riza M ; Zager, Michael A ; Aldinger, Kimberly A ; Blecher-Gonen, Ronnie ; Zhang, Fan ; Spielmann, Malte ; Palis, James ; Doherty, Dan ; Steemers, Frank J ; Glass, Ian A ; Trapnell, Cole ; Shendure, Jay

Science (American Association for the Advancement of Science), 2020-11, Vol.370 (6518) [Periódico revisado por pares]

United States: The American Association for the Advancement of Science

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6
A molecular cell atlas of the human lung from single-cell RNA sequencing
A molecular cell atlas of the human lung from single-cell RNA sequencing
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A molecular cell atlas of the human lung from single-cell RNA sequencing

Travaglini, Kyle J ; Nabhan, Ahmad N ; Penland, Lolita ; Sinha, Rahul ; Gillich, Astrid ; Sit, Rene V ; Chang, Stephen ; Conley, Stephanie D ; Mori, Yasuo ; Seita, Jun ; Berry, Gerald J ; Shrager, Joseph B ; Metzger, Ross J ; Kuo, Christin S ; Neff, Norma ; Weissman, Irving L ; Quake, Stephen R ; Krasnow, Mark A

Nature (London), 2020-11, Vol.587 (7835), p.619-625 [Periódico revisado por pares]

England: Nature Publishing Group

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7
Topographic organization of the human subcortex unveiled with functional connectivity gradients
Topographic organization of the human subcortex unveiled with functional connectivity gradients
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Topographic organization of the human subcortex unveiled with functional connectivity gradients

Tian, Ye ; Margulies, Daniel S ; Breakspear, Michael ; Zalesky, Andrew

Nature neuroscience, 2020-11, Vol.23 (11), p.1421-1432 [Periódico revisado por pares]

United States: Nature Publishing Group

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8
COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets
COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets
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COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets

Delorey, Toni M ; Ziegler, Carly G K ; Heimberg, Graham ; Yang, Yiming ; Segerstolpe, Åsa ; Abbondanza, Domenic ; Fleming, Stephen J ; Subramanian, Ayshwarya ; Montoro, Daniel T ; Jagadeesh, Karthik A ; Dey, Kushal K ; Sen, Pritha ; Slyper, Michal ; Pita-Juárez, Yered H ; Phillips, Devan ; Biermann, Jana ; Bloom-Ackermann, Zohar ; Barkas, Nikolaos ; Ganna, Andrea ; Gomez, James ; Melms, Johannes C ; Katsyv, Igor ; Normandin, Erica ; Naderi, Pourya ; Popov, Yury V ; Raju, Siddharth S ; Niezen, Sebastian ; Tsai, Linus T-Y ; Siddle, Katherine J ; Sud, Malika ; Tran, Victoria M ; Vellarikkal, Shamsudheen K ; Wang, Yiping ; Amir-Zilberstein, Liat ; Beechem, Joseph ; Brook, Olga R ; Chen, Jonathan ; Divakar, Prajan ; Engreitz, Jesse M ; Essene, Adam ; Fitzgerald, Donna M ; Fropf, Robin ; Gazal, Steven ; Gould, Joshua ; Harvey, Tyler ; Hether, Tyler ; Jané-Valbuena, Judit ; Leney-Greene, Michael ; Ma, Hui ; McLoughlin, Daniel E ; Niemi, Mari ; Padera, Robert ; Pan, Liuliu ; Pant, Deepti ; Pe'er, Carmel ; Pfiffner-Borges, Jenna ; Pinto, Christopher J ; Plaisted, Jacob ; Reeves, Jason ; Ross, Marty ; Rudy, Melissa ; Rueckert, Erroll H ; Siciliano, Michelle ; Sturm, Alexander ; Todres, Ellen ; Waghray, Avinash ; Warren, Sarah ; Zhang, Shuting ; Zollinger, Daniel R ; Cosimi, Lisa ; Gupta, Rajat M ; Hibshoosh, Hanina ; Hide, Winston ; Price, Alkes L ; Rajagopal, Jayaraj ; Tata, Purushothama Rao ; Riedel, Stefan ; Szabo, Gyongyi ; Tickle, Timothy L ; Ellinor, Patrick T ; Hung, Deborah ; Sabeti, Pardis C ; Novak, Richard ; Rogers, Robert ; Ingber, Donald E ; Jiang, Z Gordon ; Juric, Dejan ; Babadi, Mehrtash ; Farhi, Samouil L ; Izar, Benjamin ; Stone, James R ; Vlachos, Ioannis S ; Solomon, Isaac H ; Ashenberg, Orr ; Porter, Caroline B M ; Li, Bo ; Shalek, Alex K ; Villani, Alexandra-Chloé ; Rozenblatt-Rosen, Orit ; Regev, Aviv

Nature (London), 2021-07, Vol.595 (7865), p.107-4 [Periódico revisado por pares]

England: Nature Publishing Group

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9
An anatomic transcriptional atlas of human glioblastoma
An anatomic transcriptional atlas of human glioblastoma
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An anatomic transcriptional atlas of human glioblastoma

Puchalski, Ralph B ; Shah, Nameeta ; Miller, Jeremy ; Dalley, Rachel ; Nomura, Steve R ; Yoon, Jae-Guen ; Smith, Kimberly A ; Lankerovich, Michael ; Bertagnolli, Darren ; Bickley, Kris ; Boe, Andrew F ; Brouner, Krissy ; Butler, Stephanie ; Caldejon, Shiella ; Chapin, Mike ; Datta, Suvro ; Dee, Nick ; Desta, Tsega ; Dolbeare, Tim ; Dotson, Nadezhda ; Ebbert, Amanda ; Feng, David ; Feng, Xu ; Fisher, Michael ; Gee, Garrett ; Goldy, Jeff ; Gourley, Lindsey ; Gregor, Benjamin W ; Gu, Guangyu ; Hejazinia, Nika ; Hohmann, John ; Hothi, Parvinder ; Howard, Robert ; Joines, Kevin ; Kriedberg, Ali ; Kuan, Leonard ; Lau, Chris ; Lee, Felix ; Lee, Hwahyung ; Lemon, Tracy ; Long, Fuhui ; Mastan, Naveed ; Mott, Erika ; Murthy, Chantal ; Ngo, Kiet ; Olson, Eric ; Reding, Melissa ; Riley, Zack ; Rosen, David ; Sandman, David ; Shapovalova, Nadiya ; Slaughterbeck, Clifford R ; Sodt, Andrew ; Stockdale, Graham ; Szafer, Aaron ; Wakeman, Wayne ; Wohnoutka, Paul E ; White, Steven J ; Marsh, Don ; Rostomily, Robert C ; Ng, Lydia ; Dang, Chinh ; Jones, Allan ; Keogh, Bart ; Gittleman, Haley R ; Barnholtz-Sloan, Jill S ; Cimino, Patrick J ; Uppin, Megha S ; Keene, C Dirk ; Farrokhi, Farrokh R ; Lathia, Justin D ; Berens, Michael E ; Iavarone, Antonio ; Bernard, Amy ; Lein, Ed ; Phillips, John W ; Rostad, Steven W ; Cobbs, Charles ; Hawrylycz, Michael J ; Foltz, Greg D

Science (American Association for the Advancement of Science), 2018-05, Vol.360 (6389), p.660-663 [Periódico revisado por pares]

United States: The American Association for the Advancement of Science

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10
An atlas of the protein-coding genes in the human, pig, and mouse brain
An atlas of the protein-coding genes in the human, pig, and mouse brain
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An atlas of the protein-coding genes in the human, pig, and mouse brain

Sjöstedt, Evelina ; Zhong, Wen ; Fagerberg, Linn ; Karlsson, Max ; Mitsios, Nicholas ; Adori, Csaba ; Oksvold, Per ; Edfors, Fredrik ; Limiszewska, Agnieszka ; Hikmet, Feria ; Huang, Jinrong ; Du, Yutao ; Lin, Lin ; Dong, Zhanying ; Yang, Ling ; Liu, Xin ; Jiang, Hui ; Xu, Xun ; Wang, Jian ; Yang, Huanming ; Bolund, Lars ; Mardinoglu, Adil ; Zhang, Cheng ; von Feilitzen, Kalle ; Lindskog, Cecilia ; Pontén, Fredrik ; Luo, Yonglun ; Hökfelt, Tomas ; Uhlén, Mathias ; Mulder, Jan

Science (American Association for the Advancement of Science), 2020-03, Vol.367 (6482), p.1090 [Periódico revisado por pares]

United States: The American Association for the Advancement of Science

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