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Evolution of a signaling nexus constrained by protein interfaces and conformational States
Evolution of a signaling nexus constrained by protein interfaces and conformational States
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Evolution of a signaling nexus constrained by protein interfaces and conformational States

Temple, Brenda R S ; Jones, Corbin D ; Jones, Alan M Lichtarge, Olivier

PLoS computational biology, 2010-10, Vol.6 (10), p.e1000962-e1000962 [Periódico revisado por pares]

United States: Public Library of Science

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2
Active nuclear receptors exhibit highly correlated AF-2 domain motions
Active nuclear receptors exhibit highly correlated AF-2 domain motions
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Active nuclear receptors exhibit highly correlated AF-2 domain motions

Teotico, Denise G ; Frazier, Monica L ; Ding, Feng ; Dokholyan, Nikolay V ; Temple, Brenda R S ; Redinbo, Matthew R Fetrow, Jacquelyn S.

PLoS computational biology, 2008-07, Vol.4 (7), p.e1000111-e1000111 [Periódico revisado por pares]

United States: Public Library of Science

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3
Transcription factor map alignment of promoter regions
Transcription factor map alignment of promoter regions
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Transcription factor map alignment of promoter regions

Blanco, Enrique ; Messeguer, Xavier ; Smith, Temple F ; Guigó, Roderic Bourne, Philip

PLoS computational biology, 2006-05, Vol.2 (5), p.e49-e49 [Periódico revisado por pares]

United States: Public Library of Science

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4
Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)
Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)
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Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

Ramsey, Jolene ; McIntosh, Brenley ; Renfro, Daniel ; Aleksander, Suzanne A ; LaBonte, Sandra ; Ross, Curtis ; Zweifel, Adrienne E ; Liles, Nathan ; Farrar, Shabnam ; Gill, Jason J ; Erill, Ivan ; Ades, Sarah ; Berardini, Tanya Z ; Bennett, Jennifer A ; Brady, Siobhan ; Britton, Robert ; Carbon, Seth ; Caruso, Steven M ; Clements, Dave ; Dalia, Ritu ; Defelice, Meredith ; Doyle, Erin L ; Friedberg, Iddo ; Gurney, Susan M R ; Hughes, Lee ; Johnson, Allison ; Kowalski, Jason M ; Li, Donghui ; Lovering, Ruth C ; Mans, Tamara L ; McCarthy, Fiona ; Moore, Sean D ; Murphy, Rebecca ; Paustian, Timothy D ; Perdue, Sarah ; Peterson, Celeste N ; Prüß, Birgit M ; Saha, Margaret S ; Sheehy, Robert R ; Tansey, John T ; Temple, Louise ; Thorman, Alexander William ; Trevino, Saul ; Vollmer, Amy Cheng ; Walbot, Virginia ; Willey, Joanne ; Siegele, Deborah A ; Hu, James C Ouellette, Francis

PLoS computational biology, 2021-10, Vol.17 (10), p.e1009463 [Periódico revisado por pares]

United States: Public Library of Science

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5
A new method for inferring timetrees from temporally sampled molecular sequences
A new method for inferring timetrees from temporally sampled molecular sequences
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A new method for inferring timetrees from temporally sampled molecular sequences

Miura, Sayaka ; Tamura, Koichiro ; Tao, Qiqing ; Huuki, Louise A ; Kosakovsky Pond, Sergei L ; Priest, Jessica ; Deng, Jiamin ; Kumar, Sudhir Tanaka, Mark M.

PLoS computational biology, 2020-01, Vol.16 (1), p.e1007046-e1007046 [Periódico revisado por pares]

United States: Public Library of Science

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6
Dynamic coupling of residues within proteins as a mechanistic foundation of many enigmatic pathogenic missense variants
Dynamic coupling of residues within proteins as a mechanistic foundation of many enigmatic pathogenic missense variants
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Dynamic coupling of residues within proteins as a mechanistic foundation of many enigmatic pathogenic missense variants

Ose, Nicholas J ; Butler, Brandon M ; Kumar, Avishek ; Kazan, I Can ; Sanderford, Maxwell ; Kumar, Sudhir ; Ozkan, S Banu Wallqvist, Anders

PLoS computational biology, 2022-04, Vol.18 (4), p.e1010006-e1010006 [Periódico revisado por pares]

United States: Public Library of Science

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7
Deep sequencing of protease inhibitor resistant HIV patient isolates reveals patterns of correlated mutations in Gag and protease
Deep sequencing of protease inhibitor resistant HIV patient isolates reveals patterns of correlated mutations in Gag and protease
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Deep sequencing of protease inhibitor resistant HIV patient isolates reveals patterns of correlated mutations in Gag and protease

Flynn, William F ; Chang, Max W ; Tan, Zhiqiang ; Oliveira, Glenn ; Yuan, Jinyun ; Okulicz, Jason F ; Torbett, Bruce E ; Levy, Ronald M Myers, Chad L

PLoS computational biology, 2015-04, Vol.11 (4), p.e1004249-e1004249 [Periódico revisado por pares]

United States: Public Library of Science

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8
Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference
Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference
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Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference

Karcher, Michael D ; Palacios, Julia A ; Bedford, Trevor ; Suchard, Marc A ; Minin, Vladimir N Kosakovsky Pond, Sergei L.

PLoS computational biology, 2016-03, Vol.12 (3), p.e1004789-e1004789 [Periódico revisado por pares]

United States: Public Library of Science

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9
Efficient pedigree recording for fast population genetics simulation
Efficient pedigree recording for fast population genetics simulation
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Efficient pedigree recording for fast population genetics simulation

Kelleher, Jerome ; Thornton, Kevin R ; Ashander, Jaime ; Ralph, Peter L Kosakovsky Pond, Sergei L.

PLoS computational biology, 2018-11, Vol.14 (11), p.e1006581-e1006581 [Periódico revisado por pares]

United States: Public Library of Science

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10
Bayesian inference of ancestral recombination graphs
Bayesian inference of ancestral recombination graphs
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Bayesian inference of ancestral recombination graphs

Mahmoudi, Ali ; Koskela, Jere ; Kelleher, Jerome ; Chan, Yao-Ban ; Balding, David Kosakovsky Pond, Sergei L.

PLoS computational biology, 2022-03, Vol.18 (3), p.e1009960-e1009960 [Periódico revisado por pares]

United States: Public Library of Science

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