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An expanded Notch-Delta model exhibiting long-range patterning and incorporating MicroRNA regulation
An expanded Notch-Delta model exhibiting long-range patterning and incorporating MicroRNA regulation
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An expanded Notch-Delta model exhibiting long-range patterning and incorporating MicroRNA regulation

Chen, Jerry S ; Gumbayan, Abygail M ; Zeller, Robert W ; Mahaffy, Joseph M Nie, Qing

PLoS computational biology, 2014-06, Vol.10 (6), p.e1003655-e1003655 [Periódico revisado por pares]

United States: Public Library of Science

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Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics
Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics
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Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics

Giacomoni, Franck ; Le Corguillé, Gildas ; Monsoor, Misharl ; Landi, Marion ; Pericard, Pierre ; Pétéra, Mélanie ; Duperier, Christophe ; Tremblay-Franco, Marie ; Martin, Jean-François ; Jacob, Daniel ; Goulitquer, Sophie ; Thévenot, Etienne A ; Caron, Christophe

Bioinformatics, 2015-05, Vol.31 (9), p.1493-1495 [Periódico revisado por pares]

England: Oxford University Press (OUP)

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3
Proline: an efficient and user-friendly software suite for large-scale proteomics
Proline: an efficient and user-friendly software suite for large-scale proteomics
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Proline: an efficient and user-friendly software suite for large-scale proteomics

Bouyssié, David ; Hesse, Anne-Marie ; Mouton-Barbosa, Emmanuelle ; Rompais, Magali ; Macron, Charlotte ; Carapito, Christine ; Gonzalez de Peredo, Anne ; Couté, Yohann ; Dupierris, Véronique ; Burel, Alexandre ; Menetrey, Jean-Philippe ; Kalaitzakis, Andrea ; Poisat, Julie ; Romdhani, Aymen ; Burlet-Schiltz, Odile ; Cianférani, Sarah ; Garin, Jerome ; Bruley, Christophe Valencia, Alfonso

Bioinformatics, 2020-05, Vol.36 (10), p.3148-3155 [Periódico revisado por pares]

England: Oxford University Press

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4
OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs
OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs
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OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs

Sethna, Zachary ; Elhanati, Yuval ; Callan, Curtis G ; Walczak, Aleksandra M ; Mora, Thierry Berger, Bonnie

Bioinformatics (Oxford, England), 2019-09, Vol.35 (17), p.2974-2981 [Periódico revisado por pares]

England: Oxford University Press (OUP)

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Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
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Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

Hufsky, Franziska ; Lamkiewicz, Kevin ; Almeida, Alexandre ; Aouacheria, Abdel ; Arighi, Cecilia ; Bateman, Alex ; Baumbach, Jan ; Beerenwinkel, Niko ; Brandt, Christian ; Cacciabue, Marco ; Chuguransky, Sara ; Drechsel, Oliver ; Finn, Robert D ; Fritz, Adrian ; Fuchs, Stephan ; Hattab, Georges ; Hauschild, Anne-Christin ; Heider, Dominik ; Hoffmann, Marie ; Hölzer, Martin ; Hoops, Stefan ; Kaderali, Lars ; Kalvari, Ioanna ; von Kleist, Max ; Kmiecinski, Renó ; Kühnert, Denise ; Lasso, Gorka ; Libin, Pieter ; List, Markus ; Löchel, Hannah F ; Martin, Maria J ; Martin, Roman ; Matschinske, Julian ; McHardy, Alice C ; Mendes, Pedro ; Mistry, Jaina ; Navratil, Vincent ; Nawrocki, Eric P ; O’Toole, Áine Niamh ; Ontiveros-Palacios, Nancy ; Petrov, Anton I ; Rangel-Pineros, Guillermo ; Redaschi, Nicole ; Reimering, Susanne ; Reinert, Knut ; Reyes, Alejandro ; Richardson, Lorna ; Robertson, David L ; Sadegh, Sepideh ; Singer, Joshua B ; Theys, Kristof ; Upton, Chris ; Welzel, Marius ; Williams, Lowri ; Marz, Manja

Briefings in bioinformatics, 2020-11, Vol.22 (2), p.642-663 [Periódico revisado por pares]

England: Oxford University Press

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6
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
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A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

Dillies, Marie-Agnès ; Rau, Andrea ; Aubert, Julie ; Hennequet-Antier, Christelle ; Jeanmougin, Marine ; Servant, Nicolas ; Keime, Céline ; Marot, Guillemette ; Castel, David ; Estelle, Jordi ; Guernec, Gregory ; Jagla, Bernd ; Jouneau, Luc ; Laloë, Denis ; Le Gall, Caroline ; Schaëffer, Brigitte ; Le Crom, Stéphane ; Guedj, Mickaël ; Jaffrézic, Florence

Briefings in bioinformatics, 2013-11, Vol.14 (6), p.671-683 [Periódico revisado por pares]

England: Oxford Publishing Limited (England)

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7
A computational approach to distinguish somatic vs. germline origin of genomic alterations from deep sequencing of cancer specimens without a matched normal
A computational approach to distinguish somatic vs. germline origin of genomic alterations from deep sequencing of cancer specimens without a matched normal
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A computational approach to distinguish somatic vs. germline origin of genomic alterations from deep sequencing of cancer specimens without a matched normal

Sun, James X ; He, Yuting ; Sanford, Eric ; Montesion, Meagan ; Frampton, Garrett M ; Vignot, Stéphane ; Soria, Jean-Charles ; Ross, Jeffrey S ; Miller, Vincent A ; Stephens, Phil J ; Lipson, Doron ; Yelensky, Roman Dunbrack, Roland L.

PLoS computational biology, 2018-02, Vol.14 (2), p.e1005965-e1005965 [Periódico revisado por pares]

United States: Public Library of Science

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8
Clustal W and Clustal X version 2.0
Clustal W and Clustal X version 2.0
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Clustal W and Clustal X version 2.0

Larkin, M.A. ; Blackshields, G. ; Brown, N.P. ; Chenna, R. ; McGettigan, P.A. ; McWilliam, H. ; Valentin, F. ; Wallace, I.M. ; Wilm, A. ; Lopez, R. ; Thompson, J.D. ; Gibson, T.J. ; Higgins, D.G.

Bioinformatics, 2007-11, Vol.23 (21), p.2947-2948 [Periódico revisado por pares]

Oxford: Oxford University Press

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9
Automatic prediction of polysaccharide utilization loci in Bacteroidetes species
Automatic prediction of polysaccharide utilization loci in Bacteroidetes species
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Automatic prediction of polysaccharide utilization loci in Bacteroidetes species

Terrapon, Nicolas ; Lombard, Vincent ; Gilbert, Harry J ; Henrissat, Bernard

Bioinformatics, 2015-03, Vol.31 (5), p.647-655 [Periódico revisado por pares]

England: Oxford University Press (OUP)

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10
Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects
Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects
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Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects

Meunier, Loïc ; Tocquin, Pierre ; Cornet, Luc ; Sirjacobs, Damien ; Leclère, Valérie ; Pupin, Maude ; Jacques, Philippe ; Baurain, Denis Luigi Martelli, Pier

Bioinformatics, 2020-08, Vol.36 (15), p.4345-4347 [Periódico revisado por pares]

England: Oxford University Press

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