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1
MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data
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MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

Huson, Daniel H ; Beier, Sina ; Flade, Isabell ; Górska, Anna ; El-Hadidi, Mohamed ; Mitra, Suparna ; Ruscheweyh, Hans-Joachim ; Tappu, Rewati Poisot, Timothée

PLoS computational biology, 2016-06, Vol.12 (6), p.e1004957-e1004957 [Periódico revisado por pares]

United States: Public Library of Science

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2
Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database
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Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database

Zappia, Luke ; Phipson, Belinda ; Oshlack, Alicia Schneidman, Dina

PLoS computational biology, 2018-06, Vol.14 (6), p.e1006245-e1006245 [Periódico revisado por pares]

United States: Public Library of Science

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3
Apollo: Democratizing genome annotation
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Apollo: Democratizing genome annotation

Dunn, Nathan A ; Unni, Deepak R ; Diesh, Colin ; Munoz-Torres, Monica ; Harris, Nomi L ; Yao, Eric ; Rasche, Helena ; Holmes, Ian H ; Elsik, Christine G ; Lewis, Suzanna E Darling, Aaron E.

PLoS computational biology, 2019-02, Vol.15 (2), p.e1006790-e1006790 [Periódico revisado por pares]

United States: Public Library of Science

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4
Removing contaminants from databases of draft genomes
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Removing contaminants from databases of draft genomes

Lu, Jennifer ; Salzberg, Steven L Sun, Fengzhu

PLoS computational biology, 2018-06, Vol.14 (6), p.e1006277-e1006277 [Periódico revisado por pares]

United States: Public Library of Science

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5
Deep learning as a tool for neural data analysis: Speech classification and cross-frequency coupling in human sensorimotor cortex
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Deep learning as a tool for neural data analysis: Speech classification and cross-frequency coupling in human sensorimotor cortex

Livezey, Jesse A ; Bouchard, Kristofer E ; Chang, Edward F Miller, Kai

PLoS computational biology, 2019-09, Vol.15 (9), p.e1007091-e1007091 [Periódico revisado por pares]

United States: Public Library of Science

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6
phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets
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phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets

De Maio, Nicola ; Boulton, William ; Weilguny, Lukas ; Walker, Conor R ; Turakhia, Yatish ; Corbett-Detig, Russell ; Goldman, Nick Mustonen, Ville

PLoS computational biology, 2022-04, Vol.18 (4), p.e1010056-e1010056 [Periódico revisado por pares]

United States: Public Library of Science

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7
BioJava 5: A community driven open-source bioinformatics library
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BioJava 5: A community driven open-source bioinformatics library

Lafita, Aleix ; Bliven, Spencer ; Prlić, Andreas ; Guzenko, Dmytro ; Rose, Peter W ; Bradley, Anthony ; Pavan, Paolo ; Myers-Turnbull, Douglas ; Valasatava, Yana ; Heuer, Michael ; Larson, Matt ; Burley, Stephen K ; Duarte, Jose M Schneidman-Duhovny, Dina

PLoS computational biology, 2019-02, Vol.15 (2), p.e1006791-e1006791 [Periódico revisado por pares]

United States: Public Library of Science

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8
Calibration of individual-based models to epidemiological data: A systematic review
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Calibration of individual-based models to epidemiological data: A systematic review

Hazelbag, C Marijn ; Dushoff, Jonathan ; Dominic, Emanuel M ; Mthombothi, Zinhle E ; Delva, Wim Kouyos, Roger Dimitri

PLoS computational biology, 2020-05, Vol.16 (5), p.e1007893-e1007893 [Periódico revisado por pares]

United States: Public Library of Science

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9
Ten simple rules for large-scale data processing
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Ten simple rules for large-scale data processing

Fungtammasan, Arkarachai ; Lee, Alexandra ; Taroni, Jaclyn ; Wheeler, Kurt ; Chin, Chen-Shan ; Davis, Sean ; Greene, Casey

PLoS computational biology, 2022-02, Vol.18 (2), p.e1009757-e1009757 [Periódico revisado por pares]

United States: Public Library of Science

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10
MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures
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MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures

Bradley, Anthony R ; Rose, Alexander S ; Pavelka, Antonín ; Valasatava, Yana ; Duarte, Jose M ; Prlić, Andreas ; Rose, Peter W Schneidman, Dina

PLoS computational biology, 2017-06, Vol.13 (6), p.e1005575-e1005575 [Periódico revisado por pares]

United States: Public Library of Science

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