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Pervasive domestication of defective prophages by bacteria
Pervasive domestication of defective prophages by bacteria
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Pervasive domestication of defective prophages by bacteria

Bobay, Louis-Marie ; Touchon, Marie ; Rocha, Eduardo P. C.

Proceedings of the National Academy of Sciences - PNAS, 2014-08, Vol.111 (33), p.12127-12132 [Peer Reviewed Journal]

United States: National Academy of Sciences

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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

Couvin, David ; Bernheim, Aude ; Toffano-Nioche, Claire ; Touchon, Marie ; Michalik, Juraj ; Néron, Bertrand ; Rocha, Eduardo P C ; Vergnaud, Gilles ; Gautheret, Daniel ; Pourcel, Christine

Nucleic acids research, 2018-07, Vol.46 (W1), p.W246-W251 [Peer Reviewed Journal]

England: Oxford University Press

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Mobility of Plasmids
Mobility of Plasmids
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Mobility of Plasmids

SMILLIE, Chris ; GARCILLAN-BARCIA, M. Pilar ; FRANCIA, M. Victoria ; ROCHA, Eduardo P. C ; DE LA CRUZ, Fernando

Microbiology and Molecular Biology Reviews, 2010-09, Vol.74 (3), p.434-452 [Peer Reviewed Journal]

Washington, DC: American Society for Microbiology

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4
Neutral Theory, Microbial Practice: Challenges in Bacterial Population Genetics
Neutral Theory, Microbial Practice: Challenges in Bacterial Population Genetics
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Neutral Theory, Microbial Practice: Challenges in Bacterial Population Genetics

Rocha, Eduardo P C Kumar, Sudhir

Molecular biology and evolution, 2018-06, Vol.35 (6), p.1338-1347 [Peer Reviewed Journal]

United States: Oxford University Press (OUP)

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Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion
Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion
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Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion

Pfeifer, Eugen ; Bonnin, Rémy A. ; Rocha, Eduardo P. C. Goldman, Gustavo H.

mBio, 2022-10, Vol.13 (5), p.e0185122-e0185122 [Peer Reviewed Journal]

1752 N St., N.W., Washington, DC: American Society for Microbiology

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6
The adaptation of temperate bacteriophages to their host genomes
The adaptation of temperate bacteriophages to their host genomes
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The adaptation of temperate bacteriophages to their host genomes

Bobay, Louis-Marie ; Rocha, Eduardo P C ; Touchon, Marie

Molecular biology and evolution, 2013-04, Vol.30 (4), p.737-751 [Peer Reviewed Journal]

United States: Oxford Publishing Limited (England)

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Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion
Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion
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Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion

Guglielmini, Julien ; Néron, Bertrand ; Abby, Sophie S ; Garcillán-Barcia, María Pilar ; la Cruz, Fernando de ; Rocha, Eduardo P. C

Nucleic acids research, 2014-05, Vol.42 (9), p.5715-5727 [Peer Reviewed Journal]

England: Oxford University Press

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8
After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection
After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection
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After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection

Namouchi, Amine ; Didelot, Xavier ; Schöck, Ulrike ; Gicquel, Brigitte ; Rocha, Eduardo P C

Genome research, 2012-04, Vol.22 (4), p.721-734 [Peer Reviewed Journal]

United States: Cold Spring Harbor Laboratory Press

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9
CRISPR Distribution within the Escherichia coli Species Is Not Suggestive of Immunity-Associated Diversifying Selection
CRISPR Distribution within the Escherichia coli Species Is Not Suggestive of Immunity-Associated Diversifying Selection
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CRISPR Distribution within the Escherichia coli Species Is Not Suggestive of Immunity-Associated Diversifying Selection

TOUCHON, Marie ; CHARPENTIER, Sophie ; CLERMONT, Olivier ; ROCHA, Eduardo P. C ; DENAMUR, Erick ; BRANGER, Catherine

Journal of Bacteriology, 2011-05, Vol.193 (10), p.2460-2467 [Peer Reviewed Journal]

Washington, DC: American Society for Microbiology

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10
Evolution of conjugation and type IV secretion systems
Evolution of conjugation and type IV secretion systems
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Evolution of conjugation and type IV secretion systems

Guglielmini, Julien ; de la Cruz, Fernando ; Rocha, Eduardo P C

Molecular biology and evolution, 2013-02, Vol.30 (2), p.315-331 [Peer Reviewed Journal]

United States: Oxford Publishing Limited (England)

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