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Whole genome sequencing and analysis of plant growth promoting bacteria isolated from the rhizosphere of plantation crops coconut, cocoa and arecanut
Whole genome sequencing and analysis of plant growth promoting bacteria isolated from the rhizosphere of plantation crops coconut, cocoa and arecanut
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Whole genome sequencing and analysis of plant growth promoting bacteria isolated from the rhizosphere of plantation crops coconut, cocoa and arecanut

Gupta, Alka ; Gopal, Murali ; Thomas, George V ; Manikandan, Vinu ; Gajewski, John ; Thomas, George ; Seshagiri, Somasekar ; Schuster, Stephan C ; Rajesh, Preeti ; Gupta, Ravi Pellegrini, Matteo

PloS one, 2014-08, Vol.9 (8), p.e104259 [Periódico revisado por pares]

United States: Public Library of Science

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2
Using RNA-Seq to profile soybean seed development from fertilization to maturity
Using RNA-Seq to profile soybean seed development from fertilization to maturity
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Using RNA-Seq to profile soybean seed development from fertilization to maturity

Jones, Sarah I ; Vodkin, Lila O Pellegrini, Matteo

PloS one, 2013-03, Vol.8 (3), p.e59270-e59270 [Periódico revisado por pares]

United States: Public Library of Science

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3
Bagging statistical network inference from large-scale gene expression data
Bagging statistical network inference from large-scale gene expression data
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Bagging statistical network inference from large-scale gene expression data

de Matos Simoes, Ricardo ; Emmert-Streib, Frank Pellegrini, Matteo

PloS one, 2012-03, Vol.7 (3), p.e33624-e33624 [Periódico revisado por pares]

United States: Public Library of Science

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4
Novel epigenetic changes unveiled by monozygotic twins discordant for smoking habits
Novel epigenetic changes unveiled by monozygotic twins discordant for smoking habits
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Novel epigenetic changes unveiled by monozygotic twins discordant for smoking habits

Allione, Alessandra ; Marcon, Francesca ; Fiorito, Giovanni ; Guarrera, Simonetta ; Siniscalchi, Ester ; Zijno, Andrea ; Crebelli, Riccardo ; Matullo, Giuseppe Pellegrini, Matteo

PloS one, 2015-06, Vol.10 (6), p.e0128265-e0128265 [Periódico revisado por pares]

United States: Public Library of Science

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5
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
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gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

Kammonen, Juhana I ; Smolander, Olli-Pekka ; Paulin, Lars ; Pereira, Pedro A B ; Laine, Pia ; Koskinen, Patrik ; Jernvall, Jukka ; Auvinen, Petri Pellegrini, Matteo

PloS one, 2019-09, Vol.14 (9), p.e0216885-e0216885 [Periódico revisado por pares]

United States: Public Library of Science

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6
Genome-Wide Distribution, Organisation and Functional Characterization of Disease Resistance and Defence Response Genes across Rice Species
Genome-Wide Distribution, Organisation and Functional Characterization of Disease Resistance and Defence Response Genes across Rice Species
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Genome-Wide Distribution, Organisation and Functional Characterization of Disease Resistance and Defence Response Genes across Rice Species

Singh, Sangeeta ; Chand, Suresh ; Singh, N K ; Sharma, Tilak Raj Pellegrini, Matteo

PloS one, 2015-04, Vol.10 (4), p.e0125964-e0125964 [Periódico revisado por pares]

United States: Public Library of Science

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7
High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region
High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region
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High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region

Sati, Satish ; Tanwar, Vinay Singh ; Kumar, K Anand ; Patowary, Ashok ; Jain, Vaibhav ; Ghosh, Sourav ; Ahmad, Shadab ; Singh, Meghna ; Reddy, S Umakar ; Chandak, Giriraj Ratan ; Raghunath, Manchala ; Sivasubbu, Sridhar ; Chakraborty, Kausik ; Scaria, Vinod ; Sengupta, Shantanu Pellegrini, Matteo

PloS one, 2012-02, Vol.7 (2), p.e31621-e31621 [Periódico revisado por pares]

United States: Public Library of Science

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8
Castor bean organelle genome sequencing and worldwide genetic diversity analysis
Castor bean organelle genome sequencing and worldwide genetic diversity analysis
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Castor bean organelle genome sequencing and worldwide genetic diversity analysis

Rivarola, Maximo ; Foster, Jeffrey T ; Chan, Agnes P ; Williams, Amber L ; Rice, Danny W ; Liu, Xinyue ; Melake-Berhan, Admasu ; Huot Creasy, Heather ; Puiu, Daniela ; Rosovitz, M J ; Khouri, Hoda M ; Beckstrom-Sternberg, Stephen M ; Allan, Gerard J ; Keim, Paul ; Ravel, Jacques ; Rabinowicz, Pablo D Pellegrini, Matteo

PloS one, 2011-07, Vol.6 (7), p.e21743 [Periódico revisado por pares]

United States: Public Library of Science

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9
Analysis and Visualization Tool for Targeted Amplicon Bisulfite Sequencing on Ion Torrent Sequencers
Analysis and Visualization Tool for Targeted Amplicon Bisulfite Sequencing on Ion Torrent Sequencers
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Analysis and Visualization Tool for Targeted Amplicon Bisulfite Sequencing on Ion Torrent Sequencers

Pabinger, Stephan ; Ernst, Karina ; Pulverer, Walter ; Kallmeyer, Rainer ; Valdes, Ana M ; Metrustry, Sarah ; Katic, Denis ; Nuzzo, Angelo ; Kriegner, Albert ; Vierlinger, Klemens ; Weinhaeusel, Andreas Pellegrini, Matteo

PloS one, 2016-07, Vol.11 (7), p.e0160227-e0160227 [Periódico revisado por pares]

United States: Public Library of Science

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10
Genome wide analysis of acute myeloid leukemia reveal leukemia specific methylome and subtype specific hypomethylation of repeats
Genome wide analysis of acute myeloid leukemia reveal leukemia specific methylome and subtype specific hypomethylation of repeats
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Genome wide analysis of acute myeloid leukemia reveal leukemia specific methylome and subtype specific hypomethylation of repeats

Saied, Marwa H ; Marzec, Jacek ; Khalid, Sabah ; Smith, Paul ; Down, Thomas A ; Rakyan, Vardhman K ; Molloy, Gael ; Raghavan, Manoj ; Debernardi, Silvana ; Young, Bryan D Pellegrini, Matteo

PloS one, 2012-03, Vol.7 (3), p.e33213-e33213 [Periódico revisado por pares]

United States: Public Library of Science

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