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Refinado por: Base de dados/Biblioteca: BACON - Mir@bel - GLOBAL_LIBRESACCES remover Nome da Publicação: Plos Computational Biology remover EZB Electronic Journals Library remover
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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

Bouckaert, Remco ; Vaughan, Timothy G ; Barido-Sottani, Joëlle ; Duchêne, Sebastián ; Fourment, Mathieu ; Gavryushkina, Alexandra ; Heled, Joseph ; Jones, Graham ; Kühnert, Denise ; De Maio, Nicola ; Matschiner, Michael ; Mendes, Fábio K ; Müller, Nicola F ; Ogilvie, Huw A ; du Plessis, Louis ; Popinga, Alex ; Rambaut, Andrew ; Rasmussen, David ; Siveroni, Igor ; Suchard, Marc A ; Wu, Chieh-Hsi ; Xie, Dong ; Zhang, Chi ; Stadler, Tanja ; Drummond, Alexei J Pertea, Mihaela

PLoS computational biology, 2019-04, Vol.15 (4), p.e1006650-e1006650 [Periódico revisado por pares]

United States: Public Library of Science

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2
Better together: Elements of successful scientific software development in a distributed collaborative community
Better together: Elements of successful scientific software development in a distributed collaborative community
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Better together: Elements of successful scientific software development in a distributed collaborative community

Koehler Leman, Julia ; Weitzner, Brian D ; Renfrew, P Douglas ; Lewis, Steven M ; Moretti, Rocco ; Watkins, Andrew M ; Mulligan, Vikram Khipple ; Lyskov, Sergey ; Adolf-Bryfogle, Jared ; Labonte, Jason W ; Krys, Justyna ; Bystroff, Christopher ; Schief, William ; Gront, Dominik ; Schueler-Furman, Ora ; Baker, David ; Bradley, Philip ; Dunbrack, Roland ; Kortemme, Tanja ; Leaver-Fay, Andrew ; Strauss, Charlie E M ; Meiler, Jens ; Kuhlman, Brian ; Gray, Jeffrey J ; Bonneau, Richard Schneidman-Duhovny, Dina

PLoS computational biology, 2020-05, Vol.16 (5), p.e1007507-e1007507 [Periódico revisado por pares]

United States: Public Library of Science

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3
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar
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A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar

Garrison, Erik ; Kronenberg, Zev N ; Dawson, Eric T ; Pedersen, Brent S ; Prins, Pjotr Schneidman-Duhovny, Dina

PLoS computational biology, 2022-05, Vol.18 (5), p.e1009123-e1009123 [Periódico revisado por pares]

United States: Public Library of Science

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4
Ten simple rules on writing clean and reliable open-source scientific software
Ten simple rules on writing clean and reliable open-source scientific software
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Ten simple rules on writing clean and reliable open-source scientific software

Hunter-Zinck, Haley ; de Siqueira, Alexandre Fioravante ; Vásquez, Váleri N ; Barnes, Richard ; Martinez, Ciera C Markel, Scott

PLoS computational biology, 2021-11, Vol.17 (11), p.e1009481-e1009481 [Periódico revisado por pares]

United States: Public Library of Science

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5
Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits
Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits
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Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits

Dai, Kael ; Gratiy, Sergey L ; Billeh, Yazan N ; Xu, Richard ; Cai, Binghuang ; Cain, Nicholas ; Rimehaug, Atle E ; Stasik, Alexander J ; Einevoll, Gaute T ; Mihalas, Stefan ; Koch, Christof ; Arkhipov, Anton Marinazzo, Daniele

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008386-e1008386 [Periódico revisado por pares]

United States: Public Library of Science

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6
OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement
OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement
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OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement

Seth, Ajay ; Hicks, Jennifer L ; Uchida, Thomas K ; Habib, Ayman ; Dembia, Christopher L ; Dunne, James J ; Ong, Carmichael F ; DeMers, Matthew S ; Rajagopal, Apoorva ; Millard, Matthew ; Hamner, Samuel R ; Arnold, Edith M ; Yong, Jennifer R ; Lakshmikanth, Shrinidhi K ; Sherman, Michael A ; Ku, Joy P ; Delp, Scott L Schneidman, Dina

PLoS computational biology, 2018-07, Vol.14 (7), p.e1006223-e1006223 [Periódico revisado por pares]

United States: Public Library of Science

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7
SMOG 2: A Versatile Software Package for Generating Structure-Based Models
SMOG 2: A Versatile Software Package for Generating Structure-Based Models
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SMOG 2: A Versatile Software Package for Generating Structure-Based Models

Noel, Jeffrey K ; Levi, Mariana ; Raghunathan, Mohit ; Lammert, Heiko ; Hayes, Ryan L ; Onuchic, José N ; Whitford, Paul C Prlic, Andreas

PLoS computational biology, 2016-03, Vol.12 (3), p.e1004794-e1004794 [Periódico revisado por pares]

United States: Public Library of Science

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8
Apollo: Democratizing genome annotation
Apollo: Democratizing genome annotation
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Apollo: Democratizing genome annotation

Dunn, Nathan A ; Unni, Deepak R ; Diesh, Colin ; Munoz-Torres, Monica ; Harris, Nomi L ; Yao, Eric ; Rasche, Helena ; Holmes, Ian H ; Elsik, Christine G ; Lewis, Suzanna E Darling, Aaron E.

PLoS computational biology, 2019-02, Vol.15 (2), p.e1006790-e1006790 [Periódico revisado por pares]

United States: Public Library of Science

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9
FAIR-USE4OS: Guidelines for creating impactful open-source software
FAIR-USE4OS: Guidelines for creating impactful open-source software
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FAIR-USE4OS: Guidelines for creating impactful open-source software

Sonabend, Raphael ; Gruson, Hugo ; Wolansky, Leo ; Kiragga, Agnes ; Katz, Daniel S Papin, Jason A.

PLoS computational biology, 2024-05, Vol.20 (5), p.e1012045-e1012045 [Periódico revisado por pares]

United States: Public Library of Science

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10
Ten simple rules for making a software tool workflow-ready
Ten simple rules for making a software tool workflow-ready
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Ten simple rules for making a software tool workflow-ready

Brack, Paul ; Crowther, Peter ; Soiland-Reyes, Stian ; Owen, Stuart ; Lowe, Douglas ; Williams, Alan R ; Groom, Quentin ; Dillen, Mathias ; Coppens, Frederik ; Grüning, Björn ; Eguinoa, Ignacio ; Ewels, Philip ; Goble, Carole Markel, Scott

PLoS computational biology, 2022-03, Vol.18 (3), p.e1009823-e1009823 [Periódico revisado por pares]

United States: Public Library of Science

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