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Better together: Elements of successful scientific software development in a distributed collaborative community
Better together: Elements of successful scientific software development in a distributed collaborative community
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Better together: Elements of successful scientific software development in a distributed collaborative community

Koehler Leman, Julia ; Weitzner, Brian D ; Renfrew, P Douglas ; Lewis, Steven M ; Moretti, Rocco ; Watkins, Andrew M ; Mulligan, Vikram Khipple ; Lyskov, Sergey ; Adolf-Bryfogle, Jared ; Labonte, Jason W ; Krys, Justyna ; Bystroff, Christopher ; Schief, William ; Gront, Dominik ; Schueler-Furman, Ora ; Baker, David ; Bradley, Philip ; Dunbrack, Roland ; Kortemme, Tanja ; Leaver-Fay, Andrew ; Strauss, Charlie E M ; Meiler, Jens ; Kuhlman, Brian ; Gray, Jeffrey J ; Bonneau, Richard Schneidman-Duhovny, Dina

PLoS computational biology, 2020-05, Vol.16 (5), p.e1007507-e1007507 [Periódico revisado por pares]

United States: Public Library of Science

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2
A fuzzy TOPSIS based analysis toward selection of effective security requirements engineering approach for trustworthy healthcare software development
A fuzzy TOPSIS based analysis toward selection of effective security requirements engineering approach for trustworthy healthcare software development
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A fuzzy TOPSIS based analysis toward selection of effective security requirements engineering approach for trustworthy healthcare software development

Ansari, Md Tarique Jamal ; Al-Zahrani, Fahad Ahmed ; Pandey, Dhirendra ; Agrawal, Alka

BMC medical informatics and decision making, 2020-09, Vol.20 (1), p.236-236, Article 236 [Periódico revisado por pares]

England: BioMed Central Ltd

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3
Reference gene validation for RT-qPCR, a note on different available software packages
Reference gene validation for RT-qPCR, a note on different available software packages
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Reference gene validation for RT-qPCR, a note on different available software packages

De Spiegelaere, Ward ; Dern-Wieloch, Jutta ; Weigel, Roswitha ; Schumacher, Valérie ; Schorle, Hubert ; Nettersheim, Daniel ; Bergmann, Martin ; Brehm, Ralph ; Kliesch, Sabine ; Vandekerckhove, Linos ; Fink, Cornelia Cotterill, Sue

PloS one, 2015-03, Vol.10 (3), p.e0122515-e0122515 [Periódico revisado por pares]

United States: Public Library of Science

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4
An environment for sustainable research software in Germany and beyond: Current state, open challenges, and call for action
An environment for sustainable research software in Germany and beyond: Current state, open challenges, and call for action
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An environment for sustainable research software in Germany and beyond: Current state, open challenges, and call for action

Anzt, Hartwig ; Bach, Felix ; Druskat, Stephan ; Löffler, Frank ; Loewe, Axel ; Renard, Bernhard Y ; Seemann, Gunnar ; Struck, Alexander ; Achhammer, Elke ; Aggarwal, Piush ; Appel, Franziska ; Bader, Michael ; Brusch, Lutz ; Busse, Christian ; Chourdakis, Gerasimos ; Dabrowski, Piotr Wojciech ; Ebert, Peter ; Flemisch, Bernd ; Friedl, Sven ; Fritzsch, Bernadette ; Funk, Maximilian D ; Gast, Volker ; Goth, Florian ; Grad, Jean-Noël ; Hermann, Sibylle ; Hohmann, Florian ; Janosch, Stephan ; Kutra, Dominik ; Linxweiler, Jan ; Muth, Thilo ; Peters-Kottig, Wolfgang ; Rack, Fabian ; Raters, Fabian H.C ; Rave, Stephan ; Reina, Guido ; Reißig, Malte ; Ropinski, Timo ; Schaarschmidt, Joerg ; Seibold, Heidi ; Thiele, Jan P ; Uekermann, Benjamin ; Unger, Stefan ; Weeber, Rudolf

F1000 research, 2020, Vol.9, p.295 [Periódico revisado por pares]

London: F1000 Research Ltd

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5
Collaboration gets the most out of software
Collaboration gets the most out of software
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Collaboration gets the most out of software

Morin, Andrew ; Eisenbraun, Ben ; Key, Jason ; Sanschagrin, Paul C ; Timony, Michael A ; Ottaviano, Michelle ; Sliz, Piotr

eLife, 2013-09, Vol.2, p.e01456-e01456 [Periódico revisado por pares]

England: eLife Sciences Publications Ltd

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6
Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits
Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits
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Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits

Dai, Kael ; Gratiy, Sergey L ; Billeh, Yazan N ; Xu, Richard ; Cai, Binghuang ; Cain, Nicholas ; Rimehaug, Atle E ; Stasik, Alexander J ; Einevoll, Gaute T ; Mihalas, Stefan ; Koch, Christof ; Arkhipov, Anton Marinazzo, Daniele

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008386-e1008386 [Periódico revisado por pares]

United States: Public Library of Science

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7
OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement
OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement
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OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement

Seth, Ajay ; Hicks, Jennifer L ; Uchida, Thomas K ; Habib, Ayman ; Dembia, Christopher L ; Dunne, James J ; Ong, Carmichael F ; DeMers, Matthew S ; Rajagopal, Apoorva ; Millard, Matthew ; Hamner, Samuel R ; Arnold, Edith M ; Yong, Jennifer R ; Lakshmikanth, Shrinidhi K ; Sherman, Michael A ; Ku, Joy P ; Delp, Scott L Schneidman, Dina

PLoS computational biology, 2018-07, Vol.14 (7), p.e1006223-e1006223 [Periódico revisado por pares]

United States: Public Library of Science

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8
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data
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phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data

McMurdie, Paul J ; Holmes, Susan Watson, Michael

PloS one, 2013-04, Vol.8 (4), p.e61217-e61217 [Periódico revisado por pares]

United States: Public Library of Science

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9
A large-scale analysis of bioinformatics code on GitHub
A large-scale analysis of bioinformatics code on GitHub
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A large-scale analysis of bioinformatics code on GitHub

Russell, Pamela H ; Johnson, Rachel L ; Ananthan, Shreyas ; Harnke, Benjamin ; Carlson, Nichole E Qin, Zhaohui

PloS one, 2018-10, Vol.13 (10), p.e0205898-e0205898 [Periódico revisado por pares]

United States: Public Library of Science

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10
Software reliability model of open source software based on the decreasing trend of fault introduction
Software reliability model of open source software based on the decreasing trend of fault introduction
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Software reliability model of open source software based on the decreasing trend of fault introduction

Wang, Jinyong ; Zhang, Ce ; Yang, Jianying Xin, Baogui

PloS one, 2022-05, Vol.17 (5), p.e0267171-e0267171 [Periódico revisado por pares]

United States: Public Library of Science

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