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HyPhy 2.5—A Customizable Platform for Evolutionary Hypothesis Testing Using PhylogeniesKosakovsky Pond, Sergei L ; Poon, Art F Y ; Velazquez, Ryan ; Weaver, Steven ; Hepler, N Lance ; Murrell, Ben ; Shank, Stephen D ; Magalis, Brittany Rife ; Bouvier, Dave ; Nekrutenko, Anton ; Wisotsky, Sadie ; Spielman, Stephanie J ; Frost, Simon D W ; Muse, Spencer V Crandall, KeithMolecular biology and evolution, 2020-01, Vol.37 (1), p.295-299 [Periódico revisado por pares]United States: Oxford University PressTexto completo disponível |
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Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using GgtreeYu, Guangchuang ; Lam, Tommy Tsan-Yuk ; Zhu, Huachen ; Guan, Yi Battistuzzi, Fabia UrsulaMolecular biology and evolution, 2018-12, Vol.35 (12), p.3041-3043 [Periódico revisado por pares]United States: Oxford University PressTexto completo disponível |
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Molecular phylogeny, biogeography, and habitat preference evolution of marsupialsMitchell, Kieren J ; Pratt, Renae C ; Watson, Laura N ; Gibb, Gillian C ; Llamas, Bastien ; Kasper, Marta ; Edson, Janette ; Hopwood, Blair ; Male, Dean ; Armstrong, Kyle N ; Meyer, Matthias ; Hofreiter, Michael ; Austin, Jeremy ; Donnellan, Stephen C ; Lee, Michael S Y ; Phillips, Matthew J ; Cooper, AlanMolecular biology and evolution, 2014-09, Vol.31 (9), p.2322-2330 [Periódico revisado por pares]United States: Oxford Publishing Limited (England)Texto completo disponível |
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FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference ProgramLefort, Vincent ; Desper, Richard ; Gascuel, OlivierMolecular biology and evolution, 2015-10, Vol.32 (10), p.2798-2800 [Periódico revisado por pares]United States: Oxford Publishing Limited (England)Texto completo disponível |
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Phylogeny Estimation by Integration over Isolation with Migration ModelsHey, Jody ; Chung, Yujin ; Sethuraman, Arun ; Lachance, Joseph ; Tishkoff, Sarah ; Sousa, Vitor C ; Wang, Yong Kim, YuseobMolecular biology and evolution, 2018-11, Vol.35 (11), p.2805-2818 [Periódico revisado por pares]United States: Oxford University PressTexto completo disponível |
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Transcriptome-based Phylogeny of the Semi-aquatic Bugs (Hemiptera: Heteroptera: Gerromorpha) Reveals Patterns of Lineage Expansion in a Series of New Adaptive ZonesArmisén, David ; Viala, Séverine ; Cordeiro, Isabelle da Rocha Silva ; Crumière, Antonin Jean Johan ; Hendaoui, Elisa ; Le Bouquin, Augustin ; Duchemin, Wandrille ; Santos, Emilia ; Toubiana, William ; Vargas-Lowman, Aidamalia ; Burguez Floriano, Carla Fernanda ; Polhemus, Dan A ; Wang, Yan-Hui ; Rowe, Locke ; Moreira, Felipe Ferraz Figueiredo ; Khila, Abderrahman von der Heyden, SophieMolecular biology and evolution, 2022-11, Vol.39 (11) [Periódico revisado por pares]United States: Oxford University PressTexto completo disponível |
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Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological EvolutionHuang, Chien-Hsun ; Sun, Renran ; Hu, Yi ; Zeng, Liping ; Zhang, Ning ; Cai, Liming ; Zhang, Qiang ; Koch, Marcus A ; Al-Shehbaz, Ihsan ; Edger, Patrick P ; Pires, J Chris ; Tan, Dun-Yan ; Zhong, Yang ; Ma, HongMolecular biology and evolution, 2016-02, Vol.33 (2), p.394-412 [Periódico revisado por pares]United States: Oxford Publishing Limited (England)Texto completo disponível |
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Material Type: Artigo
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Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the RickettsialesFitzpatrick, David A ; Creevey, Christopher J ; McInerney, James OMolecular biology and evolution, 2006-01, Vol.23 (1), p.74-85 [Periódico revisado por pares]United StatesTexto completo disponível |
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Estimating divergence dates and substitution rates in the Drosophila phylogenyObbard, Darren J ; Maclennan, John ; Kim, Kang-Wook ; Rambaut, Andrew ; O'Grady, Patrick M ; Jiggins, Francis MMolecular biology and evolution, 2012-11, Vol.29 (11), p.3459-3473 [Periódico revisado por pares]United States: Oxford Publishing Limited (England)Texto completo disponível |
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Material Type: Artigo
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Assessing Uncertainty in the Rooting of the SARS-CoV-2 PhylogenyPipes, Lenore ; Wang, Hongru ; Huelsenbeck, John P ; Nielsen, Rasmus Malik, HarmitMolecular biology and evolution, 2021-04, Vol.38 (4), p.1537-1543 [Periódico revisado por pares]United States: Oxford University PressTexto completo disponível |