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Haitian coffee agroforestry systems harbor complex arabica variety mixtures and under-recognized genetic diversity
Haitian coffee agroforestry systems harbor complex arabica variety mixtures and under-recognized genetic diversity
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Haitian coffee agroforestry systems harbor complex arabica variety mixtures and under-recognized genetic diversity

Millet, Claude Patrick ; Allinne, Clémentine ; Vi, Tram ; Marraccini, Pierre ; Verleysen, Lauren ; Couderc, Marie ; Ruttink, Tom ; Zhang, Dapeng ; Sanchéz, William Solano ; Tranchant-Dubreuil, Christine ; Jeune, Wesly ; Poncet, Valérie

Public Library of Science (PLoS) 2024

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2
Pellioditis pelhamensis n. sp. (Nematoda: Rhabditidae) and Pellioditis pellio (Schneider, 1866), earthworm associates from different subclades within Pellioditis (syn. Phasmarhabditis Andrassy, 1976)
Pellioditis pelhamensis n. sp. (Nematoda: Rhabditidae) and Pellioditis pellio (Schneider, 1866), earthworm associates from different subclades within Pellioditis (syn. Phasmarhabditis Andrassy, 1976)
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Pellioditis pelhamensis n. sp. (Nematoda: Rhabditidae) and Pellioditis pellio (Schneider, 1866), earthworm associates from different subclades within Pellioditis (syn. Phasmarhabditis Andrassy, 1976)

De Ley, Irma Tandingan ; Kiontke, Karin ; Bert, Wim ; Sudhaus, Walter ; Fitch, David H. A

2023

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3
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars
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The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars

Salojärvi, Jarkko ; Rambani, Aditi ; Yu, Zhe ; Guyot, Romain ; Strickler, Susan ; Lepelley, Maud ; Wang, Cui ; Rajaraman, Sitaram ; Rastas, Pasi ; Zheng, Chunfang ; Muñoz, Daniella Santos ; Meidanis, João ; Paschoal, Alexandre Rossi ; Bawin, Yves ; Krabbenhoft, Trevor J ; Wang, Zhen Qin ; Fleck, Steven J ; Aussel, Rudy ; Bellanger, Laurence ; Charpagne, Aline ; Fournier, Coralie ; Kassam, Mohamed ; Lefebvre, Gregory ; Métairon, Sylviane ; Moine, Déborah ; Rigoreau, Michel ; Stolte, Jens ; Hamon, Perla ; Couturon, Emmanuel ; Tranchant-Dubreuil, Christine ; Mukherjee, Minakshi ; Lan, Tianying ; Engelhardt, Jan ; Stadler, Peter ; Correia De Lemos, Samara Mireza ; Suzuki, Suzana Ivamoto ; Sumirat, Ucu ; Wai, Ching Man ; Dauchot, Nicolas ; Orozco-Arias, Simon ; Garavito, Andrea ; Kiwuka, Catherine ; Musoli, Pascal ; Nalukenge, Anne ; Guichoux, Erwan ; Reinout, Havinga ; Smit, Martin ; Carretero-Paulet, Lorenzo ; Filho, Oliveiro Guerreiro ; Braghini, Masako Toma ; Padilha, Lilian ; Sera, Gustavo Hiroshi ; Ruttink, Tom ; Henry, Robert ; Marraccini, Pierre ; Van de Peer, Yves ; Andrade, Alan ; Domingues, Douglas ; Giuliano, Giovanni ; Mueller, Lukas ; Pereira, Luiz Filipe ; Plaisance, Stephane ; Poncet, Valerie ; Rombauts, Stephane ; Sankoff, David ; Albert, Victor A ; Crouzillat, Dominique ; de Kochko, Alexandre ; Descombes, Patrick

Springer Science and Business Media LLC 2024

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4
Including marker x environment interactions improves genomic prediction in red clover (Trifolium pratense L.)
Including marker x environment interactions improves genomic prediction in red clover (Trifolium pratense L.)
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Including marker x environment interactions improves genomic prediction in red clover (Trifolium pratense L.)

Skøt, Leif ; Nay, Michelle M ; Grieder, Christoph ; Frey, Lea A ; Pégard, Marie ; Öhlund, Linda ; Amdahl, Helga ; Radovic, Jasmina ; Jaluvka, Libor ; Palmé, Anna ; Ruttink, Tom ; Lloyd, David ; Howarth, Catherine J ; Kölliker, Roland

Frontiers Media SA 2024

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5
Reporting animal research: Explanation and elaboration for the ARRIVE guidelines 2.0
Reporting animal research: Explanation and elaboration for the ARRIVE guidelines 2.0
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Reporting animal research: Explanation and elaboration for the ARRIVE guidelines 2.0

Percie du Sert, Nathalie ; Ahluwalia, Amrita ; Alam, Sabina ; Avey, Marc T. ; Baker, Monya ; Browne, William J. ; Clark, Alejandra ; Cuthill, Innes C. ; Dirnagl, Ulrich ; Emerson, Michael ; Garner, Paul ; Holgate, Stephen T. ; Howells, David W. ; Hurst, Viki ; Karp, Natasha A. ; Lazic, Stanley E. ; Lidster, Katie ; MacCallum, Catriona J. ; Macleod, Malcolm ; Pearl, Esther J. ; Petersen, Ole H. ; Rawle, Frances ; Reynolds, Penny ; Rooney, Kieron ; Sena, Emily S. ; Silberberg, Shai D. ; Steckler, Thomas ; Würbel, Hanno Boutron, Isabelle

PLoS biology, 2020-07, Vol.18 (7), p.e3000411-e3000411 [Periódico revisado por pares]

San Francisco: Public Library of Science

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6
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
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OpenMM 7: Rapid development of high performance algorithms for molecular dynamics

Eastman, Peter ; Swails, Jason ; Chodera, John D ; McGibbon, Robert T ; Zhao, Yutong ; Beauchamp, Kyle A ; Wang, Lee-Ping ; Simmonett, Andrew C ; Harrigan, Matthew P ; Stern, Chaya D ; Wiewiora, Rafal P ; Brooks, Bernard R ; Pande, Vijay S Gentleman, Robert

PLoS computational biology, 2017-07, Vol.13 (7), p.e1005659-e1005659 [Periódico revisado por pares]

United States: Public Library of Science

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7
Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation
Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation
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Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation

Upham, Nathan S ; Esselstyn, Jacob A ; Jetz, Walter Tanentzap, Andrew J.

PLoS biology, 2019-12, Vol.17 (12), p.e3000494-e3000494 [Periódico revisado por pares]

United States: Public Library of Science

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8
mixOmics: An R package for 'omics feature selection and multiple data integration
mixOmics: An R package for 'omics feature selection and multiple data integration
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mixOmics: An R package for 'omics feature selection and multiple data integration

Rohart, Florian ; Gautier, Benoît ; Singh, Amrit ; Lê Cao, Kim-Anh Schneidman, Dina

PLoS computational biology, 2017-11, Vol.13 (11), p.e1005752-e1005752 [Periódico revisado por pares]

United States: Public Library of Science

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9
HSV-2-Driven Increase in the Expression of α4β7 Correlates with Increased Susceptibility to Vaginal SHIVSF162P3 Infection
HSV-2-Driven Increase in the Expression of α4β7 Correlates with Increased Susceptibility to Vaginal SHIVSF162P3 Infection
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HSV-2-Driven Increase in the Expression of α4β7 Correlates with Increased Susceptibility to Vaginal SHIVSF162P3 Infection

Goode, Diana ; Truong, Rosaline ; Villegas, Guillermo ; Calenda, Giulia ; Guerra-Perez, Natalia ; Piatak, Michael ; Lifson, Jeffrey D. ; Blanchard, James ; Gettie, Agegnehu ; Robbiani, Melissa ; Martinelli, Elena Silvestri, Guido

PLoS pathogens, 2014-12, Vol.10 (12), p.e1004567 [Periódico revisado por pares]

San Francisco, USA: Public Library of Science

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10
Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice
Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice
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Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice

Edwards, Joseph A ; Santos-Medellín, Christian M ; Liechty, Zachary S ; Nguyen, Bao ; Lurie, Eugene ; Eason, Shane ; Phillips, Gregory ; Sundaresan, Venkatesan Gore, Jeff

PLoS biology, 2018-02, Vol.16 (2), p.e2003862-e2003862 [Periódico revisado por pares]

United States: Public Library of Science

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