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Molecular Interaction Fields: Applications in Drug Discovery and ADME Prediction
Molecular Interaction Fields: Applications in Drug Discovery and ADME Prediction
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Molecular Interaction Fields: Applications in Drug Discovery and ADME Prediction

Cruciani, Gabriele ; Mannhold, Raimund ; Kubinyi, Hugo ; Folkers, Gerd

Newark: John Wiley & Sons, Incorporated 2005

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2
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

Bouckaert, Remco ; Vaughan, Timothy G ; Barido-Sottani, Joëlle ; Duchêne, Sebastián ; Fourment, Mathieu ; Gavryushkina, Alexandra ; Heled, Joseph ; Jones, Graham ; Kühnert, Denise ; De Maio, Nicola ; Matschiner, Michael ; Mendes, Fábio K ; Müller, Nicola F ; Ogilvie, Huw A ; du Plessis, Louis ; Popinga, Alex ; Rambaut, Andrew ; Rasmussen, David ; Siveroni, Igor ; Suchard, Marc A ; Wu, Chieh-Hsi ; Xie, Dong ; Zhang, Chi ; Stadler, Tanja ; Drummond, Alexei J Pertea, Mihaela

PLoS computational biology, 2019-04, Vol.15 (4), p.e1006650-e1006650 [Periódico revisado por pares]

United States: Public Library of Science

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3
Better together: Elements of successful scientific software development in a distributed collaborative community
Better together: Elements of successful scientific software development in a distributed collaborative community
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Better together: Elements of successful scientific software development in a distributed collaborative community

Koehler Leman, Julia ; Weitzner, Brian D ; Renfrew, P Douglas ; Lewis, Steven M ; Moretti, Rocco ; Watkins, Andrew M ; Mulligan, Vikram Khipple ; Lyskov, Sergey ; Adolf-Bryfogle, Jared ; Labonte, Jason W ; Krys, Justyna ; Bystroff, Christopher ; Schief, William ; Gront, Dominik ; Schueler-Furman, Ora ; Baker, David ; Bradley, Philip ; Dunbrack, Roland ; Kortemme, Tanja ; Leaver-Fay, Andrew ; Strauss, Charlie E M ; Meiler, Jens ; Kuhlman, Brian ; Gray, Jeffrey J ; Bonneau, Richard Schneidman-Duhovny, Dina

PLoS computational biology, 2020-05, Vol.16 (5), p.e1007507-e1007507 [Periódico revisado por pares]

United States: Public Library of Science

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4
Qiita: rapid, web-enabled microbiome meta-analysis
Qiita: rapid, web-enabled microbiome meta-analysis
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Qiita: rapid, web-enabled microbiome meta-analysis

Gonzalez, Antonio ; Navas-Molina, Jose A ; Kosciolek, Tomasz ; McDonald, Daniel ; Vázquez-Baeza, Yoshiki ; Ackermann, Gail ; DeReus, Jeff ; Janssen, Stefan ; Swafford, Austin D ; Orchanian, Stephanie B ; Sanders, Jon G ; Shorenstein, Joshua ; Holste, Hannes ; Petrus, Semar ; Robbins-Pianka, Adam ; Brislawn, Colin J ; Wang, Mingxun ; Rideout, Jai Ram ; Bolyen, Evan ; Dillon, Matthew ; Caporaso, J Gregory ; Dorrestein, Pieter C ; Knight, Rob

Nature methods, 2018-10, Vol.15 (10), p.796-798 [Periódico revisado por pares]

United States: Nature Publishing Group

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5
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
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Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0

Heirendt, Laurent ; Arreckx, Sylvain ; Pfau, Thomas ; Mendoza, Sebastián N ; Richelle, Anne ; Heinken, Almut ; Haraldsdóttir, Hulda S ; Wachowiak, Jacek ; Keating, Sarah M ; Vlasov, Vanja ; Magnusdóttir, Stefania ; Ng, Chiam Yu ; Preciat, German ; Žagare, Alise ; Chan, Siu H J ; Aurich, Maike K ; Clancy, Catherine M ; Modamio, Jennifer ; Sauls, John T ; Noronha, Alberto ; Bordbar, Aarash ; Cousins, Benjamin ; El Assal, Diana C ; Valcarcel, Luis V ; Apaolaza, Iñigo ; Ghaderi, Susan ; Ahookhosh, Masoud ; Ben Guebila, Marouen ; Kostromins, Andrejs ; Sompairac, Nicolas ; Le, Hoai M ; Ma, Ding ; Sun, Yuekai ; Wang, Lin ; Yurkovich, James T ; Oliveira, Miguel A P ; Vuong, Phan T ; El Assal, Lemmer P ; Kuperstein, Inna ; Zinovyev, Andrei ; Hinton, H Scott ; Bryant, William A ; Aragón Artacho, Francisco J ; Planes, Francisco J ; Stalidzans, Egils ; Maass, Alejandro ; Vempala, Santosh ; Hucka, Michael ; Saunders, Michael A ; Maranas, Costas D ; Lewis, Nathan E ; Sauter, Thomas ; Palsson, Bernhard Ø ; Thiele, Ines ; Fleming, Ronan M T

Nature protocols, 2019-03, Vol.14 (3), p.639-702 [Periódico revisado por pares]

England: Nature Publishing Group

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6
RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language
RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language
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RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

Höhna, Sebastian ; Landis, Michael J. ; Heath, Tracy A. ; Boussau, Bastien ; Lartillot, Nicolas ; Moore, Brian R. ; Huelsenbeck, John P. ; Ronquist, Fredrik

Systematic biology, 2016-07, Vol.65 (4), p.726-736 [Periódico revisado por pares]

England: Oxford University Press

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7
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar
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A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar

Garrison, Erik ; Kronenberg, Zev N ; Dawson, Eric T ; Pedersen, Brent S ; Prins, Pjotr Schneidman-Duhovny, Dina

PLoS computational biology, 2022-05, Vol.18 (5), p.e1009123-e1009123 [Periódico revisado por pares]

United States: Public Library of Science

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8
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
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Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Pertea, Mihaela ; Kim, Daehwan ; Pertea, Geo M ; Leek, Jeffrey T ; Salzberg, Steven L

Nature protocols, 2016-09, Vol.11 (9), p.1650-1667 [Periódico revisado por pares]

England: Nature Publishing Group

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9
Macromolecular structure determination using X‐rays, neutrons and electrons: recent developments in Phenix
Macromolecular structure determination using X‐rays, neutrons and electrons: recent developments in Phenix
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Macromolecular structure determination using X‐rays, neutrons and electrons: recent developments in Phenix

Liebschner, Dorothee ; Afonine, Pavel V. ; Baker, Matthew L. ; Bunkóczi, Gábor ; Chen, Vincent B. ; Croll, Tristan I. ; Hintze, Bradley ; Hung, Li-Wei ; Jain, Swati ; McCoy, Airlie J. ; Moriarty, Nigel W. ; Oeffner, Robert D. ; Poon, Billy K. ; Prisant, Michael G. ; Read, Randy J. ; Richardson, Jane S. ; Richardson, David C. ; Sammito, Massimo D. ; Sobolev, Oleg V. ; Stockwell, Duncan H. ; Terwilliger, Thomas C. ; Urzhumtsev, Alexandre G. ; Videau, Lizbeth L. ; Williams, Christopher J. ; Adams, Paul D.

Acta crystallographica. Section D, Biological crystallography., 2019-10, Vol.75 (10), p.861-877 [Periódico revisado por pares]

5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of Crystallography

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10
Technical Note: Extension of CERR for computational radiomics: A comprehensive MATLAB platform for reproducible radiomics research
Technical Note: Extension of CERR for computational radiomics: A comprehensive MATLAB platform for reproducible radiomics research
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Technical Note: Extension of CERR for computational radiomics: A comprehensive MATLAB platform for reproducible radiomics research

Apte, Aditya P. ; Iyer, Aditi ; Crispin‐Ortuzar, Mireia ; Pandya, Rutu ; Dijk, Lisanne V. ; Spezi, Emiliano ; Thor, Maria ; Um, Hyemin ; Veeraraghavan, Harini ; Oh, Jung Hun ; Shukla‐Dave, Amita ; Deasy, Joseph O.

Medical physics (Lancaster), 2018-08, Vol.45 (8), p.3713-3720 [Periódico revisado por pares]

United States

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