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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Afgan, Enis ; Nekrutenko, Anton ; Grüning, Bjórn A ; Blankenberg, Daniel ; Goecks, Jeremy ; Schatz, Michael C ; Ostrovsky, Alexander E ; Mahmoud, Alexandru ; Lonie, Andrew J ; Syme, Anna ; Bretaudeau, Anthony ; Kumar, Anup ; Eschenlauer, Arthur C ; DeSanto, Assunta D ; Guerler, Aysam ; Serrano-Solano, Beatriz ; Batut, Bérénice ; Grüning, Björn A ; Langhorst, Bradley W ; Carr, Bridget ; Raubenolt, Bryan A ; Hyde, Cameron J ; Bromhead, Catherine J ; Barnett, Christopher B ; Royaux, Coline ; Gallardo, Cristóbal ; Fornika, Daniel J ; Baker, Dannon ; Bouvier, Dave ; Clements, Dave ; de Lima Morais, David A ; Tabernero, David Lopez ; Lariviere, Delphine ; Nasr, Engy ; Zambelli, Federico ; Heyl, Florian ; Psomopoulos, Fotis ; Coppens, Frederik ; Price, Gareth R ; Cuccuru, Gianmauro ; Corguillé, Gildas Le ; Von Kuster, Greg ; Akbulut, Gulsum Gudukbay ; Rasche, Helena ; Hotz, Hans-Rudolf ; Eguinoa, Ignacio ; Makunin, Igor ; Ranawaka, Isuru J ; Taylor, James P ; Joshi, Jayadev ; Hillman-Jackson, Jennifer ; Chilton, John M ; Kamali, Kaivan ; Suderman, Keith ; Poterlowicz, Krzysztof ; Yvan, Le Bras ; Lopez-Delisle, Lucille ; Sargent, Luke ; Bassetti, Madeline E ; Tangaro, Marco Antonio ; van den Beek, Marius ; Čech, Martin ; Bernt, Matthias ; Fahrner, Matthias ; Tekman, Mehmet ; Föll, Melanie C ; Crusoe, Michael R ; Roncoroni, Miguel ; Kucher, Natalie ; Coraor, Nate ; Stoler, Nicholas ; Rhodes, Nick ; Soranzo, Nicola ; Pinter, Niko ; Goonasekera, Nuwan A ; Moreno, Pablo A ; Videm, Pavankumar ; Melanie, Petera ; Mandreoli, Pietro ; Jagtap, Pratik D ; Gu, Qiang ; Weber, Ralf J M ; Lazarus, Ross ; Vorderman, Ruben H P ; Hiltemann, Saskia ; Golitsynskiy, Sergey ; Garg, Shilpa ; Bray, Simon A ; Gladman, Simon L ; Leo, Simone ; Mehta, Subina P ; Griffin, Timothy J ; Jalili, Vahid ; Yves, Vandenbrouck ; Wen, Victor ; Nagampalli, Vijay K ; Bacon, Wendi A ; de Koning, Willem ; Maier, Wolfgang ; Briggs, Peter J

Nucleic acids research, 2022-07, Vol.50 (W1), p.W345-W351 [Periódico revisado por pares]

England: Oxford University Press

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2
Excision of uracil from DNA by hSMUG1 includes strand incision and processing
Excision of uracil from DNA by hSMUG1 includes strand incision and processing
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Excision of uracil from DNA by hSMUG1 includes strand incision and processing

Alexeeva, Marina ; Moen, Marivi N ; Grøsvik, Kristin ; Tesfahun, Almaz N ; Xu, Xiang Ming ; Muruzábal-Lecumberri, Izaskun ; Olsen, Kristine M ; Rasmussen, Anette ; Ruoff, Peter ; Kirpekar, Finn ; Klungland, Arne ; Bjelland, Svein

Nucleic acids research, 2019-01, Vol.47 (2), p.779-793 [Periódico revisado por pares]

England: Oxford University Press

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3
sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms
sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms
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sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms

Aparicio-Puerta, Ernesto ; Gómez-Martín, Cristina ; Giannoukakos, Stavros ; Medina, José María ; Scheepbouwer, Chantal ; García-Moreno, Adrián ; Carmona-Saez, Pedro ; Fromm, Bastian ; Pegtel, Michiel ; Keller, Andreas ; Marchal, Juan Antonio ; Hackenberg, Michael

Nucleic acids research, 2022-07, Vol.50 (W1), p.W710-W717 [Periódico revisado por pares]

England: Oxford University Press

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4
GRAND: a database of gene regulatory network models across human conditions
GRAND: a database of gene regulatory network models across human conditions
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GRAND: a database of gene regulatory network models across human conditions

Ben Guebila, Marouen ; Lopes-Ramos, Camila M ; Weighill, Deborah ; Sonawane, Abhijeet Rajendra ; Burkholz, Rebekka ; Shamsaei, Behrouz ; Platig, John ; Glass, Kimberly ; Kuijjer, Marieke L ; Quackenbush, John

Nucleic acids research, 2022-01, Vol.50 (D1), p.D610-D621 [Periódico revisado por pares]

England: Oxford University Press

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5
Monitoring of the spatial and temporal dynamics of BER/SSBR pathway proteins, including MYH, UNG2, MPG, NTH1 and NEIL1-3, during DNA replication
Monitoring of the spatial and temporal dynamics of BER/SSBR pathway proteins, including MYH, UNG2, MPG, NTH1 and NEIL1-3, during DNA replication
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Monitoring of the spatial and temporal dynamics of BER/SSBR pathway proteins, including MYH, UNG2, MPG, NTH1 and NEIL1-3, during DNA replication

Bj Rås, Karine Ø ; Sousa, Mirta M L ; Sharma, Animesh ; Fonseca, Davi M ; S Gaard, Caroline K ; Bj Rås, Magnar ; Otterlei, Marit

Nucleic acids research, 2017-08, Vol.45 (14), p.8291-8301 [Periódico revisado por pares]

England: Oxford University Press

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6
The third helix of the homeodomain of paired class homeodomain proteins acts as a recognition helix both for DNA and protein interactions
The third helix of the homeodomain of paired class homeodomain proteins acts as a recognition helix both for DNA and protein interactions
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The third helix of the homeodomain of paired class homeodomain proteins acts as a recognition helix both for DNA and protein interactions

Bruun, Jack-Ansgar ; Thomassen, Ernst Ivan Simon ; Kristiansen, Kurt ; Tylden, Garth ; Holm, Turid ; Mikkola, Ingvild ; Bjørkøy, Geir ; Johansen, Terje

Nucleic acids research, 2005-01, Vol.33 (8), p.2661-2675 [Periódico revisado por pares]

England: Oxford University Press

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7
Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers
Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers
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Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers

Castro-Mondragon, Jaime A ; Aure, Miriam Ragle ; Lingjærde, Ole Christian ; Langerød, Anita ; Martens, John W M ; Børresen-Dale, Anne-Lise ; Kristensen, Vessela N ; Mathelier, Anthony

Nucleic acids research, 2022-11, Vol.50 (21), p.12131-12148 [Periódico revisado por pares]

England: Oxford University Press

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8
Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2
Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2
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Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2

Cernilogar, Filippo M ; Hasenöder, Stefan ; Wang, Zeyang ; Scheibner, Katharina ; Burtscher, Ingo ; Sterr, Michael ; Smialowski, Pawel ; Groh, Sophia ; Evenroed, Ida M ; Gilfillan, Gregor D ; Lickert, Heiko ; Schotta, Gunnar

Nucleic acids research, 2019-09, Vol.47 (17), p.9069-9086 [Periódico revisado por pares]

England: Oxford University Press

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9
ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments
ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments
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ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments

Chèneby, Jeanne ; Gheorghe, Marius ; Artufel, Marie ; Mathelier, Anthony ; Ballester, Benoit

Nucleic acids research, 2018-01, Vol.46 (D1), p.D267-D275 [Periódico revisado por pares]

England: Oxford University Press

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10
SigH stress response mediates killing of Mycobacterium tuberculosis by activating nitronaphthofuran prodrugs via induction of Mrx2 expression
SigH stress response mediates killing of Mycobacterium tuberculosis by activating nitronaphthofuran prodrugs via induction of Mrx2 expression
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SigH stress response mediates killing of Mycobacterium tuberculosis by activating nitronaphthofuran prodrugs via induction of Mrx2 expression

Cioetto-Mazzabò, Laura ; Boldrin, Francesca ; Beauvineau, Claire ; Speth, Martin ; Marina, Alberto ; Namouchi, Amine ; Segafreddo, Greta ; Cimino, Mena ; Favre-Rochex, Sandrine ; Balasingham, Seetha ; Trastoy, Beatriz ; Munier-Lehmann, Hélène ; Griffiths, Gareth ; Gicquel, Brigitte ; Guerin, Marcelo E ; Manganelli, Riccardo ; Alonso-Rodríguez, Noelia

Nucleic acids research, 2023-01, Vol.51 (1), p.144-165 [Periódico revisado por pares]

England: Oxford University Press

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