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COMBREX: a project to accelerate the functional annotation of prokaryotic genomes
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes
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COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

Roberts, Richard J ; Chang, Yi-Chien ; Hu, Zhenjun ; Rachlin, John N ; Anton, Brian P ; Pokrzywa, Revonda M ; Choi, Han-Pil ; Faller, Lina L ; Guleria, Jyotsna ; Housman, Genevieve ; Klitgord, Niels ; Mazumdar, Varun ; McGettrick, Mark G ; Osmani, Lais ; Swaminathan, Rajeswari ; Tao, Kevin R ; Letovsky, Stan ; Vitkup, Dennis ; Segrè, Daniel ; Salzberg, Steven L ; Delisi, Charles ; Steffen, Martin ; Kasif, Simon

Nucleic acids research, 2011-01, Vol.39 (Database issue), p.D11-D14 [Periódico revisado por pares]

England: Oxford University Press

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2
Deep sequencing of the oral microbiome reveals signatures of periodontal disease
Deep sequencing of the oral microbiome reveals signatures of periodontal disease
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Deep sequencing of the oral microbiome reveals signatures of periodontal disease

Liu, Bo ; Faller, Lina L ; Klitgord, Niels ; Mazumdar, Varun ; Ghodsi, Mohammad ; Sommer, Daniel D ; Gibbons, Theodore R ; Treangen, Todd J ; Chang, Yi-Chien ; Li, Shan ; Stine, O Colin ; Hasturk, Hatice ; Kasif, Simon ; Segrè, Daniel ; Pop, Mihai ; Amar, Salomon Highlander, Sarah K.

PloS one, 2012-06, Vol.7 (6), p.e37919 [Periódico revisado por pares]

United States: Public Library of Science

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3
Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates
Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates
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Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates

Conlan, Sean ; Mijares, Lilia A ; Becker, Jesse ; Blakesley, Robert W ; Bouffard, Gerard G ; Brooks, Shelise ; Coleman, Holly ; Gupta, Jyoti ; Gurson, Natalie ; Park, Morgan ; Schmidt, Brian ; Thomas, Pamela J ; Otto, Michael ; Kong, Heidi H ; Murray, Patrick R ; Segre, Julia A

Genome biology, 2012-07, Vol.13 (7), p.R64-R64 [Periódico revisado por pares]

England: Springer-Verlag

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4
Integrative Genomics Reveals Novel Molecular Pathways and Gene Networks for Coronary Artery Disease: e1004502
Integrative Genomics Reveals Novel Molecular Pathways and Gene Networks for Coronary Artery Disease: e1004502
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Integrative Genomics Reveals Novel Molecular Pathways and Gene Networks for Coronary Artery Disease: e1004502

Mäkinen, Ville-Petteri ; Civelek, Mete ; Meng, Qingying ; Zhang, Bin ; Zhu, Jun ; Levian, Candace ; Huan, Tianxiao ; Segrè, Ayellet V ; Ghosh, Sujoy ; Vivar, Juan ; Nikpay, Majid ; Stewart, Alexandre FR ; Nelson, Christopher P ; Willenborg, Christina ; Erdmann, Jeanette ; Blakenberg, Stefan ; März, Winfried ; Laaksonen, Reijo ; Epstein, Stephen E ; Kathiresan, Sekar ; Shah, Svati H ; Hazen, Stanley L ; Reilly, Muredach P ; Lusis, Aldons J ; Samani, Nilesh J ; Schunkert, Heribert ; Quertermous, Thomas ; McPherson, Ruth ; Yang, Xia ; Assimes, Themistocles L ; Replication, ARtery DIseaseGenome-Wide

PLoS genetics, 2014-07, Vol.10 (7) [Periódico revisado por pares]

San Francisco: Public Library of Science

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5
Integrative genomics reveals novel molecular pathways and gene networks for coronary artery disease
Integrative genomics reveals novel molecular pathways and gene networks for coronary artery disease
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Integrative genomics reveals novel molecular pathways and gene networks for coronary artery disease

Mäkinen, Ville-Petteri ; Civelek, Mete ; Meng, Qingying ; Zhang, Bin ; Zhu, Jun ; Levian, Candace ; Huan, Tianxiao ; Segrè, Ayellet V ; Ghosh, Sujoy ; Vivar, Juan ; Nikpay, Majid ; Stewart, Alexandre F R ; Nelson, Christopher P ; Willenborg, Christina ; Erdmann, Jeanette ; Blakenberg, Stefan ; O'Donnell, Christopher J ; März, Winfried ; Laaksonen, Reijo ; Epstein, Stephen E ; Kathiresan, Sekar ; Shah, Svati H ; Hazen, Stanley L ; Reilly, Muredach P ; Lusis, Aldons J ; Samani, Nilesh J ; Schunkert, Heribert ; Quertermous, Thomas ; McPherson, Ruth ; Yang, Xia ; Assimes, Themistocles L Attie, Alan

PLoS genetics, 2014-07, Vol.10 (7), p.e1004502-e1004502 [Periódico revisado por pares]

United States: Public Library of Science

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6
Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0
Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0
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Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0

Granger, Brian R ; Chang, Yi-Chien ; Wang, Yan ; DeLisi, Charles ; Segrè, Daniel ; Hu, Zhenjun Prlic, Andreas

PLoS computational biology, 2016-04, Vol.12 (4), p.e1004875-e1004875 [Periódico revisado por pares]

United States: Public Library of Science

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7
Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities
Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities
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Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities

Zomorrodi, Ali R ; Segrè, Daniel

Nature communications, 2017-11, Vol.8 (1), p.1563-12, Article 1563 [Periódico revisado por pares]

England: Nature Publishing Group

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8
Interaction between the microbiome and TP53 in human lung cancer
Interaction between the microbiome and TP53 in human lung cancer
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Interaction between the microbiome and TP53 in human lung cancer

Greathouse, K Leigh ; White, James R ; Vargas, Ashely J ; Bliskovsky, Valery V ; Beck, Jessica A ; von Muhlinen, Natalia ; Polley, Eric C ; Bowman, Elise D ; Khan, Mohammed A ; Robles, Ana I ; Cooks, Tomer ; Ryan, Bríd M ; Padgett, Noah ; Dzutsev, Amiran H ; Trinchieri, Giorgio ; Pineda, Marbin A ; Bilke, Sven ; Meltzer, Paul S ; Hokenstad, Alexis N ; Stickrod, Tricia M ; Walther-Antonio, Marina R ; Earl, Joshua P ; Mell, Joshua C ; Krol, Jaroslaw E ; Balashov, Sergey V ; Bhat, Archana S ; Ehrlich, Garth D ; Valm, Alex ; Deming, Clayton ; Conlan, Sean ; Oh, Julia ; Segre, Julie A ; Harris, Curtis C

Genome Biology, 2018-08, Vol.19 (1), p.123-16, Article 123 [Periódico revisado por pares]

England: BioMed Central

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9
Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems
Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems
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Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems

Pacheco, Alan R ; Moel, Mauricio ; Segrè, Daniel

Nature communications, 2019-01, Vol.10 (1), p.103-103, Article 103 [Periódico revisado por pares]

England: Nature Publishing Group

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10
Author Correction: Interaction between the microbiome and TP53 in human lung cancer
Author Correction: Interaction between the microbiome and TP53 in human lung cancer
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Author Correction: Interaction between the microbiome and TP53 in human lung cancer

Greathouse, K Leigh ; White, James R ; Vargas, Ashely J ; Bliskovsky, Valery V ; Beck, Jessica A ; von Muhlinen, Natalia ; Polley, Eric C ; Bowman, Elise D ; Khan, Mohammed A ; Robles, Ana I ; Cooks, Tomer ; Ryan, Bríd M ; Padgett, Noah ; Dzutsev, Amiran H ; Trinchieri, Giorgio ; Pineda, Marbin A ; Bilke, Sven ; Meltzer, Paul S ; Hokenstad, Alexis N ; Stickrod, Tricia M ; Walther-Antonio, Marina R ; Earl, Joshua P ; Mell, Joshua C ; Krol, Jaroslaw E ; Balashov, Sergey V ; Bhat, Archana S ; Ehrlich, Garth D ; Valm, Alex ; Deming, Clayton ; Conlan, Sean ; Oh, Julia ; Segre, Julie A ; Harris, Curtis C

Genome Biology, 2020-02, Vol.21 (1), p.41-1, Article 41 [Periódico revisado por pares]

England: BioMed Central

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