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Hydro-Seq enables contamination-free high-throughput single-cell RNA-sequencing for circulating tumor cells
Hydro-Seq enables contamination-free high-throughput single-cell RNA-sequencing for circulating tumor cells
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Hydro-Seq enables contamination-free high-throughput single-cell RNA-sequencing for circulating tumor cells

Cheng, Yu-Heng ; Chen, Yu-Chih ; Lin, Eric ; Brien, Riley ; Jung, Seungwon ; Chen, Yu-Ting ; Lee, Woncheol ; Hao, Zhijian ; Sahoo, Saswat ; Min Kang, Hyun ; Cong, Jason ; Burness, Monika ; Nagrath, Sunitha ; S Wicha, Max ; Yoon, Euisik

Nature communications, 2019-05, Vol.10 (1), p.2163-2163, Article 2163 [Periódico revisado por pares]

England: Nature Publishing Group

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2
Sequencing of human genomes with nanopore technology
Sequencing of human genomes with nanopore technology
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Sequencing of human genomes with nanopore technology

Bowden, Rory ; Davies, Robert W ; Heger, Andreas ; Pagnamenta, Alistair T ; de Cesare, Mariateresa ; Oikkonen, Laura E ; Parkes, Duncan ; Freeman, Colin ; Dhalla, Fatima ; Patel, Smita Y ; Popitsch, Niko ; Ip, Camilla L C ; Roberts, Hannah E ; Salatino, Silvia ; Lockstone, Helen ; Lunter, Gerton ; Taylor, Jenny C ; Buck, David ; Simpson, Michael A ; Donnelly, Peter

Nature communications, 2019-04, Vol.10 (1), p.1869-9, Article 1869 [Periódico revisado por pares]

England: Nature Publishing Group

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3
A general and flexible method for signal extraction from single-cell RNA-seq data
A general and flexible method for signal extraction from single-cell RNA-seq data
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A general and flexible method for signal extraction from single-cell RNA-seq data

Risso, Davide ; Perraudeau, Fanny ; Gribkova, Svetlana ; Dudoit, Sandrine ; Vert, Jean-Philippe

Nature communications, 2018-01, Vol.9 (1), p.284-17, Article 284 [Periódico revisado por pares]

England: Nature Publishing Group

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4
Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis
Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis
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Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

Johnson, Jethro S ; Spakowicz, Daniel J ; Hong, Bo-Young ; Petersen, Lauren M ; Demkowicz, Patrick ; Chen, Lei ; Leopold, Shana R ; Hanson, Blake M ; Agresta, Hanako O ; Gerstein, Mark ; Sodergren, Erica ; Weinstock, George M

Nature communications, 2019-11, Vol.10 (1), p.5029-11, Article 5029 [Periódico revisado por pares]

England: Nature Publishing Group

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5
Mapping and phasing of structural variation in patient genomes using nanopore sequencing
Mapping and phasing of structural variation in patient genomes using nanopore sequencing
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Mapping and phasing of structural variation in patient genomes using nanopore sequencing

Cretu Stancu, Mircea ; van Roosmalen, Markus J ; Renkens, Ivo ; Nieboer, Marleen M ; Middelkamp, Sjors ; de Ligt, Joep ; Pregno, Giulia ; Giachino, Daniela ; Mandrile, Giorgia ; Espejo Valle-Inclan, Jose ; Korzelius, Jerome ; de Bruijn, Ewart ; Cuppen, Edwin ; Talkowski, Michael E ; Marschall, Tobias ; de Ridder, Jeroen ; Kloosterman, Wigard P

Nature communications, 2017-11, Vol.8 (1), p.1326-13, Article 1326 [Periódico revisado por pares]

England: Nature Publishing Group

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6
Multi-platform discovery of haplotype-resolved structural variation in human genomes
Multi-platform discovery of haplotype-resolved structural variation in human genomes
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Multi-platform discovery of haplotype-resolved structural variation in human genomes

Chaisson, Mark J P ; Sanders, Ashley D ; Zhao, Xuefang ; Malhotra, Ankit ; Porubsky, David ; Rausch, Tobias ; Gardner, Eugene J ; Rodriguez, Oscar L ; Guo, Li ; Collins, Ryan L ; Fan, Xian ; Wen, Jia ; Handsaker, Robert E ; Fairley, Susan ; Kronenberg, Zev N ; Kong, Xiangmeng ; Hormozdiari, Fereydoun ; Lee, Dillon ; Wenger, Aaron M ; Hastie, Alex R ; Antaki, Danny ; Anantharaman, Thomas ; Audano, Peter A ; Brand, Harrison ; Cantsilieris, Stuart ; Cao, Han ; Cerveira, Eliza ; Chen, Chong ; Chen, Xintong ; Chin, Chen-Shan ; Chong, Zechen ; Chuang, Nelson T ; Lambert, Christine C ; Church, Deanna M ; Clarke, Laura ; Farrell, Andrew ; Flores, Joey ; Galeev, Timur ; Gorkin, David U ; Gujral, Madhusudan ; Guryev, Victor ; Heaton, William Haynes ; Korlach, Jonas ; Kumar, Sushant ; Kwon, Jee Young ; Lam, Ernest T ; Lee, Jong Eun ; Lee, Joyce ; Lee, Wan-Ping ; Lee, Sau Peng ; Li, Shantao ; Marks, Patrick ; Viaud-Martinez, Karine ; Meiers, Sascha ; Munson, Katherine M ; Navarro, Fabio C P ; Nelson, Bradley J ; Nodzak, Conor ; Noor, Amina ; Kyriazopoulou-Panagiotopoulou, Sofia ; Pang, Andy W C ; Qiu, Yunjiang ; Rosanio, Gabriel ; Ryan, Mallory ; Stütz, Adrian ; Spierings, Diana C J ; Ward, Alistair ; Welch, AnneMarie E ; Xiao, Ming ; Xu, Wei ; Zhang, Chengsheng ; Zhu, Qihui ; Zheng-Bradley, Xiangqun ; Lowy, Ernesto ; Yakneen, Sergei ; McCarroll, Steven ; Jun, Goo ; Ding, Li ; Koh, Chong Lek ; Ren, Bing ; Flicek, Paul ; Chen, Ken ; Gerstein, Mark B ; Kwok, Pui-Yan ; Lansdorp, Peter M ; Marth, Gabor T ; Sebat, Jonathan ; Shi, Xinghua ; Bashir, Ali ; Ye, Kai ; Devine, Scott E ; Talkowski, Michael E ; Mills, Ryan E ; Marschall, Tobias ; Korbel, Jan O ; Eichler, Evan E ; Lee, Charles

Nature communications, 2019-04, Vol.10 (1), p.1784-16, Article 1784 [Periódico revisado por pares]

England: Nature Publishing Group

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7
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
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Fast and sensitive mapping of nanopore sequencing reads with GraphMap

Sović, Ivan ; Šikić, Mile ; Wilm, Andreas ; Fenlon, Shannon Nicole ; Chen, Swaine ; Nagarajan, Niranjan

Nature communications, 2016-04, Vol.7 (1), p.11307-11307, Article 11307 [Periódico revisado por pares]

England: Nature Publishing Group

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8
Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software
Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software
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Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software

Cameron, Daniel L ; Di Stefano, Leon ; Papenfuss, Anthony T

Nature communications, 2019-07, Vol.10 (1), p.3240-11, Article 3240 [Periódico revisado por pares]

England: Nature Publishing Group

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9
Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing
Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing
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Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing

Edge, Peter ; Bansal, Vikas

Nature communications, 2019-10, Vol.10 (1), p.4660-10, Article 4660 [Periódico revisado por pares]

England: Nature Publishing Group

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10
A practical guide for mutational signature analysis in hematological malignancies
A practical guide for mutational signature analysis in hematological malignancies
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A practical guide for mutational signature analysis in hematological malignancies

Maura, Francesco ; Degasperi, Andrea ; Nadeu, Ferran ; Leongamornlert, Daniel ; Davies, Helen ; Moore, Luiza ; Royo, Romina ; Ziccheddu, Bachisio ; Puente, Xose S ; Avet-Loiseau, Herve ; Campbell, Peter J ; Nik-Zainal, Serena ; Campo, Elias ; Munshi, Nikhil ; Bolli, Niccolò

Nature communications, 2019-07, Vol.10 (1), p.2969-12, Article 2969 [Periódico revisado por pares]

England: Nature Publishing Group

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