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REVIGO summarizes and visualizes long lists of gene ontology terms
REVIGO summarizes and visualizes long lists of gene ontology terms
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REVIGO summarizes and visualizes long lists of gene ontology terms

Supek, Fran ; Bošnjak, Matko ; Škunca, Nives ; Šmuc, Tomislav Gibas, Cynthia

PloS one, 2011-07, Vol.6 (7), p.e21800-e21800 [Periódico revisado por pares]

United States: Public Library of Science

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2
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
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The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets

Szklarczyk, Damian ; Gable, Annika L ; Nastou, Katerina C ; Lyon, David ; Kirsch, Rebecca ; Pyysalo, Sampo ; Doncheva, Nadezhda T ; Legeay, Marc ; Fang, Tao ; Bork, Peer ; Jensen, Lars J ; von Mering, Christian

Nucleic acids research, 2021-01, Vol.49 (D1), p.D605-D612 [Periódico revisado por pares]

England: Oxford University Press

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3
WikiPathways: connecting communities
WikiPathways: connecting communities
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WikiPathways: connecting communities

Martens, Marvin ; Ammar, Ammar ; Riutta, Anders ; Waagmeester, Andra ; Slenter, Denise N ; Hanspers, Kristina ; A. Miller, Ryan ; Digles, Daniela ; Lopes, Elisson N ; Ehrhart, Friederike ; Dupuis, Lauren J ; Winckers, Laurent A ; Coort, Susan L ; Willighagen, Egon L ; Evelo, Chris T ; Pico, Alexander R ; Kutmon, Martina

Nucleic acids research, 2021-01, Vol.49 (D1), p.D613-D621 [Periódico revisado por pares]

England: Oxford University Press

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4
PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API
PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API
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PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API

Mi, Huaiyu ; Ebert, Dustin ; Muruganujan, Anushya ; Mills, Caitlin ; Albou, Laurent-Philippe ; Mushayamaha, Tremayne ; Thomas, Paul D

Nucleic acids research, 2021-01, Vol.49 (D1), p.D394-D403 [Periódico revisado por pares]

England: Oxford University Press

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5
UniProt: the universal protein knowledgebase in 2021
UniProt: the universal protein knowledgebase in 2021
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UniProt: the universal protein knowledgebase in 2021

Martin, Maria-Jesus ; Orchard, Sandra ; Magrane, Michele ; Agivetova, Rahat ; Bowler-Barnett, Emily H ; Britto, Ramona ; Bursteinas, Borisas ; Bye-A-Jee, Hema ; Coetzee, Ray ; Cukura, Austra ; Da Silva, Alan ; Denny, Paul ; Dogan, Tunca ; Fan, Jun ; Castro, Leyla Garcia ; Garmiri, Penelope ; Georghiou, George ; Hatton-Ellis, Emma ; Hussein, Abdulrahman ; Ignatchenko, Alexandr ; Insana, Giuseppe ; Ishtiaq, Rizwan ; Joshi, Vishal ; Jyothi, Dushyanth ; Lock, Antonia ; Lopez, Rodrigo ; Luciani, Aurelien ; MacDougall, Alistair ; Madeira, Fabio ; Menchi, Manuela ; Mishra, Alok ; Moulang, Katie ; Nightingale, Andrew ; Oliveira, Carla Susana ; Pundir, Sangya ; Qi, Guoying ; Raj, Shriya ; Lopez, Milagros Rodriguez ; Sampson, Joseph ; Speretta, Elena ; Turner, Edward ; Vasudev, Preethi ; Volynkin, Vladimir ; Warner, Kate ; Watkins, Xavier ; Zaru, Rossana ; Zellner, Hermann ; Bridge, Alan ; Poux, Sylvain ; Redaschi, Nicole ; Aimo, Lucila ; Auchincloss, Andrea ; Bansal, Parit ; Baratin, Delphine ; Bolleman, Jerven ; Boutet, Emmanuel ; Breuza, Lionel ; Casals-Casas, Cristina ; de Castro, Edouard ; Coudert, Elisabeth ; Cuche, Beatrice ; Doche, Mikael ; Dornevil, Dolnide ; Estreicher, Anne ; Famiglietti, Maria Livia ; Gasteiger, Elisabeth ; Gehant, Sebastien ; Gerritsen, Vivienne ; Gos, Arnaud ; Hulo, Chantal ; Jungo, Florence ; Keller, Guillaume ; Kerhornou, Arnaud ; Lara, Vicente ; Le Mercier, Philippe ; Lieberherr, Damien ; Martin, Xavier ; Masson, Patrick ; Neto, Teresa Batista ; Paesano, Salvo ; Pedruzzi, Ivo ; Pozzato, Monica ; Pruess, Manuela ; Stutz, Andre ; Sundaram, Shyamala ; Tognolli, Michael ; Verbregue, Laure ; Arighi, Cecilia N ; Chen, Yongxing ; Huang, Hongzhan ; Laiho, Kati ; McGarvey, Peter ; Natale, Darren A ; Ross, Karen ; Vinayaka, C R ; Wang, Qinghua ; Wang, Yuqi ; Zhang, Jian ; Ruch, Patrick ; Teodoro, Douglas

Nucleic acids research, 2021-01, Vol.49 (D1), p.D480-D489 [Periódico revisado por pares]

England: Oxford University Press

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6
PubChem in 2021: new data content and improved web interfaces
PubChem in 2021: new data content and improved web interfaces
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PubChem in 2021: new data content and improved web interfaces

Kim, Sunghwan ; Chen, Jie ; Cheng, Tiejun ; Gindulyte, Asta ; He, Jia ; He, Siqian ; Li, Qingliang ; Shoemaker, Benjamin A ; Thiessen, Paul A ; Yu, Bo ; Zaslavsky, Leonid ; Zhang, Jian ; Bolton, Evan E

Nucleic acids research, 2021-01, Vol.49 (D1), p.D1388-D1395 [Periódico revisado por pares]

England: Oxford University Press

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7
The Gene Ontology resource: enriching a GOld mine
The Gene Ontology resource: enriching a GOld mine
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The Gene Ontology resource: enriching a GOld mine

Carbon, Seth ; Good, Benjamin M ; Harris, Nomi L ; Basu, Siddartha ; Chisholm, Rex L ; Dodson, Robert J ; Hartline, Eric ; Thomas, Paul D ; Ebert, Dustin ; Muruganujan, Anushya ; Huang, Xiaosong ; LaBonte, Sandra A ; Siegele, Deborah A ; Antonazzo, Giulia ; Attrill, Helen ; Garapati, Phani ; Marygold, Steven J ; Strelets, Victor B ; Garmiri, Penelope ; Acencio, Marcio L ; Kuiper, Martin ; Saverimuttu, Shirin C C ; Pinheiro, Sandra M ; Gunn, Heather ; Thurlow, Katherine E ; Nadendla, Suvarna ; Jackson, Rebecca ; Paneerselvam, Kalpana ; Perfetto, Livia ; Porras, Pablo ; Orchard, Sandra ; Shrivastava, Anjali ; Finn, Robert Daniel ; Rawlings, Neil David ; Richardson, Lorna ; Blake, Judith A ; Christie, Karen R ; Hill, David P ; Sitnikov, Dmitry M ; Harris, Midori A ; Wood, Valerie ; Bähler, Jürg ; De Pons, Jeffery L ; Dwinell, Melinda R ; Kaldunski, Mary L ; Kwitek, Anne E ; Laulederkind, Stanley J F ; Plasterer, Cody ; Vedi, Mahima ; D’Eustachio, Peter ; Matthews, Lisa ; Alexander, Michael J ; Engel, Stacia R ; Gondwe, Felix ; Karra, Kalpana ; Miyasato, Stuart R ; Nash, Robert S ; Simison, Matt ; Skrzypek, Marek S ; Weng, Shuai ; Reiser, Leonore ; Huala, Eva ; Argoud-Puy, Ghislaine ; Blatter, Marie-Claude ; Boutet, Emmanuel ; Bowler, Emily ; Bridge, Alan ; Britto, Ramona ; Bye-A-Jee, Hema ; Casas, Cristina Casals ; Denny, Paul ; Famiglietti, Maria Livia ; Georghiou, George ; Gos, Arnaud ; Hulo, Chantal ; Ignatchenko, Alexandr ; Jungo, Florence ; Lieberherr, Damien ; Lock, Antonia ; Natale, Darren A ; Hyka-Nouspikel, Nevila ; Pedruzzi, Ivo ; Pourcel, Lucille ; Poux, Sylvain ; Warner, Kate ; Zaru, Rossana ; Wu, Cathy H ; Diehl, Alexander D ; Grove, Christian ; Lee, Raymond Y N ; Muller, Hans-Michael ; Raciti, Daniela ; Van Auken, Kimberly ; Sternberg, Paul W ; Berriman, Matthew ; Howe, Kevin ; Gao, Sibyl ; Wright, Adam ; Stein, Lincoln ; Toro, Sabrina

Nucleic acids research, 2021-01, Vol.49 (D1), p.D325-D334 [Periódico revisado por pares]

England: Oxford University Press

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8
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation
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RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation

Li, Wenjun ; O’Neill, Kathleen R ; Haft, Daniel H ; DiCuccio, Michael ; Chetvernin, Vyacheslav ; Badretdin, Azat ; Coulouris, George ; Chitsaz, Farideh ; Derbyshire, Myra K ; Durkin, A Scott ; Gonzales, Noreen R ; Gwadz, Marc ; Lanczycki, Christopher J ; Song, James S ; Thanki, Narmada ; Wang, Jiyao ; Yamashita, Roxanne A ; Yang, Mingzhang ; Zheng, Chanjuan ; Marchler-Bauer, Aron ; Thibaud-Nissen, Françoise

Nucleic acids research, 2021-01, Vol.49 (D1), p.D1020-D1028 [Periódico revisado por pares]

England: Oxford University Press

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9
ImageJ2: ImageJ for the next generation of scientific image data
ImageJ2: ImageJ for the next generation of scientific image data
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ImageJ2: ImageJ for the next generation of scientific image data

Rueden, Curtis T ; Schindelin, Johannes ; Hiner, Mark C ; DeZonia, Barry E ; Walter, Alison E ; Arena, Ellen T ; Eliceiri, Kevin W

BMC bioinformatics, 2017-11, Vol.18 (1), p.529-529, Article 529 [Periódico revisado por pares]

England: BioMed Central Ltd

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10
UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses
UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses
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UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses

Chandrashekar, Darshan S. ; Bashel, Bhuwan ; Balasubramanya, Sai Akshaya Hodigere ; Creighton, Chad J. ; Ponce-Rodriguez, Israel ; Chakravarthi, Balabhadrapatruni V.S.K. ; Varambally, Sooryanarayana

Neoplasia (New York, N.Y.), 2017-08, Vol.19 (8), p.649-658 [Periódico revisado por pares]

United States: Elsevier Inc

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