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Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13
Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13
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Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13

Hou, Jie ; Wu, Tianqi ; Cao, Renzhi ; Cheng, Jianlin

Proteins, structure, function, and bioinformatics, 2019-12, Vol.87 (12), p.1165-1178 [Periódico revisado por pares]

Hoboken, USA: John Wiley & Sons, Inc

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2
Raptorx: Exploiting structure information for protein alignment by statistical inference
Raptorx: Exploiting structure information for protein alignment by statistical inference
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Raptorx: Exploiting structure information for protein alignment by statistical inference

Peng, Jian ; Xu, Jinbo

Proteins, structure, function, and bioinformatics, 2011, Vol.79 (S10), p.161-171 [Periódico revisado por pares]

Hoboken: Wiley Subscription Services, Inc., A Wiley Company

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3
Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment
Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment
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Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment

Lensink, Marc F. ; Brysbaert, Guillaume ; Nadzirin, Nurul ; Velankar, Sameer ; Chaleil, Raphaël A. G. ; Gerguri, Tereza ; Bates, Paul A. ; Laine, Elodie ; Carbone, Alessandra ; Grudinin, Sergei ; Kong, Ren ; Liu, Ran‐Ran ; Xu, Xi‐Ming ; Shi, Hang ; Chang, Shan ; Eisenstein, Miriam ; Karczynska, Agnieszka ; Czaplewski, Cezary ; Lubecka, Emilia ; Lipska, Agnieszka ; Krupa, Paweł ; Mozolewska, Magdalena ; Golon, Łukasz ; Samsonov, Sergey ; Liwo, Adam ; Crivelli, Silvia ; Pagès, Guillaume ; Karasikov, Mikhail ; Kadukova, Maria ; Yan, Yumeng ; Huang, Sheng‐You ; Rosell, Mireia ; Rodríguez‐Lumbreras, Luis A. ; Romero‐Durana, Miguel ; Díaz‐Bueno, Lucía ; Christoffer, Charles ; Shin, Woong‐Hee ; Aderinwale, Tunde ; Maddhuri Venkata Subraman, Sai Raghavendra ; Kihara, Daisuke ; Kozakov, Dima ; Vajda, Sandor ; Porter, Kathryn ; Padhorny, Dzmitry ; Desta, Israel ; Beglov, Dmitri ; Ignatov, Mikhail ; Kotelnikov, Sergey ; Moal, Iain H. ; Ritchie, David W. ; Chauvot de Beauchêne, Isaure ; Maigret, Bernard ; Devignes, Marie‐Dominique ; Ruiz Echartea, Maria E. ; Barradas‐Bautista, Didier ; Cao, Zhen ; Cavallo, Luigi ; Oliva, Romina ; Cao, Yue ; Shen, Yang ; Park, Taeyong ; Woo, Hyeonuk ; Seok, Chaok ; Braitbard, Merav ; Bitton, Lirane ; Scheidman‐Duhovny, Dina ; Dapkūnas, Justas ; Olechnovič, Kliment ; Venclovas, Česlovas ; Kundrotas, Petras J. ; Belkin, Saveliy ; Chakravarty, Devlina ; Badal, Varsha D. ; Vakser, Ilya A. ; Vreven, Thom ; Vangaveti, Sweta ; Borrman, Tyler ; Weng, Zhiping ; Guest, Johnathan D. ; Gowthaman, Ragul ; Pierce, Brian G. ; Xu, Xianjin ; Qiu, Liming ; Hou, Jie ; Ryan Merideth, Benjamin ; Ma, Zhiwei ; Cheng, Jianlin ; Zou, Xiaoqin ; Koukos, Panagiotis I. ; Roel‐Touris, Jorge ; Ambrosetti, Francesco ; Geng, Cunliang ; Trellet, Mikael E. ; Melquiond, Adrien S. J. ; Xue, Li ; Jiménez‐García, Brian ; Noort, Charlotte W. ; Honorato, Rodrigo V. ; Bonvin, Alexandre M. J. J. ; Wodak, Shoshana J.

Proteins, structure, function, and bioinformatics, 2019-12, Vol.87 (12), p.1200-1221 [Periódico revisado por pares]

Hoboken, USA: John Wiley & Sons, Inc

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4
Accurate ligand–protein docking in CASP15 using the ClusPro LigTBM server
Accurate ligand–protein docking in CASP15 using the ClusPro LigTBM server
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Accurate ligand–protein docking in CASP15 using the ClusPro LigTBM server

Kotelnikov, Sergei ; Ashizawa, Ryota ; Popov, Konstantin I. ; Khan, Omeir ; Ignatov, Mikhail ; Li, Stan Xiaogang ; Hassan, Mosavverul ; Coutsias, Evangelos A. ; Poda, Gennady ; Padhorny, Dzmitry ; Tropsha, Alexander ; Vajda, Sandor ; Kozakov, Dima

Proteins, structure, function, and bioinformatics, 2023-12, Vol.91 (12), p.1822-1828 [Periódico revisado por pares]

Hoboken, USA: John Wiley & Sons, Inc

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5
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
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Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Mauri, Théo ; Nadzirin, Nurul ; Velankar, Sameer ; Chaleil, Raphael A. G. ; Bates, Paul A. ; Kong, Ren ; Liu, Bin ; Yang, Guangbo ; Liu, Ming ; Shi, Hang ; Lu, Xufeng ; Chang, Shan ; Roy, Raj S. ; Quadir, Farhan ; Antoniak, Anna ; Czaplewski, Cezary ; Giełdoń, Artur ; Kogut, Mateusz ; Lipska, Agnieszka G. ; Liwo, Adam ; Maszota‐Zieleniak, Martyna ; Sieradzan, Adam K. ; Ślusarz, Rafał ; Wesołowski, Patryk A. ; Zięba, Karolina ; Del Carpio Muñoz, Carlos A. ; Ichiishi, Eiichiro ; Harmalkar, Ameya ; Gray, Jeffrey J. ; Ambrosetti, Francesco ; Vargas Honorato, Rodrigo ; Jandova, Zuzana ; Jiménez‐García, Brian ; Koukos, Panagiotis I. ; Van Keulen, Siri ; Van Noort, Charlotte W. ; Réau, Manon ; Roel‐Touris, Jorge ; Kotelnikov, Sergei ; Padhorny, Dzmitry ; Porter, Kathryn A. ; Alekseenko, Andrey ; Ignatov, Mikhail ; Desta, Israel ; Ashizawa, Ryota ; Sun, Zhuyezi ; Ghani, Usman ; Hashemi, Nasser ; Vajda, Sandor ; Kozakov, Dima ; Rosell, Mireia ; Rodríguez‐Lumbreras, Luis A. ; Fernandez‐Recio, Juan ; Karczynska, Agnieszka ; Grudinin, Sergei ; Yan, Yumeng ; Li, Hao ; Lin, Peicong ; Huang, Sheng‐You ; Christoffer, Charles ; Terashi, Genki ; Verburgt, Jacob ; Sarkar, Daipayan ; Aderinwale, Tunde ; Wang, Xiao ; Kihara, Daisuke ; Nakamura, Tsukasa ; Hanazono, Yuya ; Gowthaman, Ragul ; Guest, Johnathan D. ; Yin, Rui ; Taherzadeh, Ghazaleh ; Pierce, Brian G. ; Cao, Zhen ; Cavallo, Luigi ; Oliva, Romina ; Sun, Yuanfei ; Zhu, Shaowen ; Shen, Yang ; Park, Taeyong ; Woo, Hyeonuk ; Yang, Jinsol ; Kwon, Sohee ; Won, Jonghun ; Seok, Chaok ; Kiyota, Yasuomi ; Kobayashi, Shinpei ; Harada, Yoshiki ; Takeda‐Shitaka, Mayuko ; Kundrotas, Petras J. ; Vakser, Ilya A. ; Dapkūnas, Justas ; Olechnovič, Kliment ; Venclovas, Česlovas ; Duan, Rui ; Qiu, Liming ; Xu, Xianjin ; Zhang, Shuang ; Zou, Xiaoqin ; Wodak, Shoshana J.

Proteins, structure, function, and bioinformatics, 2021-12, Vol.89 (12), p.1800-1823 [Periódico revisado por pares]

Hoboken, USA: John Wiley & Sons, Inc

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6
Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8
Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8
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Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8

Krieger, Elmar ; Joo, Keehyoung ; Lee, Jinwoo ; Lee, Jooyoung ; Raman, Srivatsan ; Thompson, James ; Tyka, Mike ; Baker, David ; Karplus, Kevin

Proteins, structure, function, and bioinformatics, 2009, Vol.77 (S9), p.114-122 [Periódico revisado por pares]

Hoboken: Wiley Subscription Services, Inc., A Wiley Company

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7
An overview of comparative modelling and resources dedicated to large‐scale modelling of genome sequences
An overview of comparative modelling and resources dedicated to large‐scale modelling of genome sequences
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An overview of comparative modelling and resources dedicated to large‐scale modelling of genome sequences

Lam, Su Datt ; Das, Sayoni ; Sillitoe, Ian ; Orengo, Christine

Acta crystallographica. Section D, Biological crystallography., 2017-08, Vol.73 (8), p.628-640 [Periódico revisado por pares]

5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of Crystallography

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8
Evaluation of template‐based modeling in CASP13
Evaluation of template‐based modeling in CASP13
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Evaluation of template‐based modeling in CASP13

Croll, Tristan I. ; Sammito, Massimo D. ; Kryshtafovych, Andriy ; Read, Randy J.

Proteins, structure, function, and bioinformatics, 2019-12, Vol.87 (12), p.1113-1127 [Periódico revisado por pares]

Hoboken, USA: John Wiley & Sons, Inc

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9
Factors Affecting Preparation of Molecularly Imprinted Polymer and Methods on Finding Template-Monomer Interaction as the Key of Selective Properties of the Materials
Factors Affecting Preparation of Molecularly Imprinted Polymer and Methods on Finding Template-Monomer Interaction as the Key of Selective Properties of the Materials
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Factors Affecting Preparation of Molecularly Imprinted Polymer and Methods on Finding Template-Monomer Interaction as the Key of Selective Properties of the Materials

Hasanah, Aliya Nur ; Safitri, Nisa ; Zulfa, Aulia ; Neli, Neli ; Rahayu, Driyanti

Molecules (Basel, Switzerland), 2021-09, Vol.26 (18), p.5612 [Periódico revisado por pares]

Basel: MDPI AG

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10
The challenge of modeling protein assemblies: the CASP12‐CAPRI experiment
The challenge of modeling protein assemblies: the CASP12‐CAPRI experiment
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The challenge of modeling protein assemblies: the CASP12‐CAPRI experiment

Lensink, Marc F. ; Velankar, Sameer ; Baek, Minkyung ; Heo, Lim ; Seok, Chaok ; Wodak, Shoshana J.

Proteins, structure, function, and bioinformatics, 2018-03, Vol.86 (S1), p.257-273 [Periódico revisado por pares]

United States: Wiley Subscription Services, Inc

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