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EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
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EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

Lun, Aaron T L ; Riesenfeld, Samantha ; Andrews, Tallulah ; Dao, The Phuong ; Gomes, Tomas ; Marioni, John C

Genome Biology, 2019-03, Vol.20 (1), p.63-63, Article 63 [Periódico revisado por pares]

England: BioMed Central

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2
Classification of low quality cells from single-cell RNA-seq data
Classification of low quality cells from single-cell RNA-seq data
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Classification of low quality cells from single-cell RNA-seq data

Ilicic, Tomislav ; Kim, Jong Kyoung ; Kolodziejczyk, Aleksandra A ; Bagger, Frederik Otzen ; McCarthy, Davis James ; Marioni, John C ; Teichmann, Sarah A

Genome Biology, 2016-02, Vol.17 (1), p.29-29, Article 29 [Periódico revisado por pares]

England: BioMed Central

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3
Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data
Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data
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Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data

Kim, Jong Kyoung ; Marioni, John C

Genome biology, 2013-01, Vol.14 (1), p.R7-R7 [Periódico revisado por pares]

England: Springer-Verlag

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4
EmptyDropsMultiome discriminates real cells from background in single-cell multiomics assays
EmptyDropsMultiome discriminates real cells from background in single-cell multiomics assays
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EmptyDropsMultiome discriminates real cells from background in single-cell multiomics assays

Megas, Stathis ; Lorenzi, Valentina ; Marioni, John C

Genome Biology, 2024-05, Vol.25 (1), p.121-15, Article 121 [Periódico revisado por pares]

England: BioMed Central

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5
f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq
f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq
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f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq

Buettner, Florian ; Pratanwanich, Naruemon ; McCarthy, Davis J ; Marioni, John C ; Stegle, Oliver

Genome Biology, 2017-11, Vol.18 (1), p.212-13, Article 212 [Periódico revisado por pares]

England: BioMed Central

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6
Coordinated changes in gene expression kinetics underlie both mouse and human erythroid maturation
Coordinated changes in gene expression kinetics underlie both mouse and human erythroid maturation
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Coordinated changes in gene expression kinetics underlie both mouse and human erythroid maturation

Barile, Melania ; Imaz-Rosshandler, Ivan ; Inzani, Isabella ; Ghazanfar, Shila ; Nichols, Jennifer ; Marioni, John C ; Guibentif, Carolina ; Göttgens, Berthold

Genome Biology, 2021-07, Vol.22 (1), p.197-197, Article 197 [Periódico revisado por pares]

England: BioMed Central

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7
CpG island composition differences are a source of gene expression noise indicative of promoter responsiveness
CpG island composition differences are a source of gene expression noise indicative of promoter responsiveness
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CpG island composition differences are a source of gene expression noise indicative of promoter responsiveness

Morgan, Michael D ; Marioni, John C

Genome Biology, 2018-06, Vol.19 (1), p.81-81, Article 81 [Periódico revisado por pares]

England: BioMed Central

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8
Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during mouse early organogenesis
Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during mouse early organogenesis
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Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during mouse early organogenesis

Clark, Stephen J ; Argelaguet, Ricard ; Lohoff, Tim ; Krueger, Felix ; Drage, Deborah ; Göttgens, Berthold ; Marioni, John C ; Nichols, Jennifer ; Reik, Wolf

Genome Biology, 2022-09, Vol.23 (1), p.202-202, Article 202 [Periódico revisado por pares]

England: BioMed Central

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9
scSNV-seq: high-throughput phenotyping of single nucleotide variants by coupled single-cell genotyping and transcriptomics
scSNV-seq: high-throughput phenotyping of single nucleotide variants by coupled single-cell genotyping and transcriptomics
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scSNV-seq: high-throughput phenotyping of single nucleotide variants by coupled single-cell genotyping and transcriptomics

Cooper, Sarah E ; Coelho, Matthew A ; Strauss, Magdalena E ; Gontarczyk, Aleksander M ; Wu, Qianxin ; Garnett, Mathew J ; Marioni, John C ; Bassett, Andrew R

Genome Biology, 2024-01, Vol.25 (1), p.20-15, Article 20 [Periódico revisado por pares]

England: BioMed Central

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10
geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq
geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq
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geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq

Missarova, Alsu ; Jain, Jaison ; Butler, Andrew ; Ghazanfar, Shila ; Stuart, Tim ; Brusko, Maigan ; Wasserfall, Clive ; Nick, Harry ; Brusko, Todd ; Atkinson, Mark ; Satija, Rahul ; Marioni, John C

Genome Biology, 2021-12, Vol.22 (1), p.333-333, Article 333 [Periódico revisado por pares]

England: BioMed Central

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Assunto 

  1. Gene Expression  (15)
  2. Genomes  (13)
  3. Humans  (12)
  4. Animals  (10)
  5. Analysis  (10)
  6. Rna  (8)
  7. Stem Cells  (8)
  8. Mice  (8)
  9. Method  (7)
  10. Single-Cell Analysis - Methods  (7)
  11. Datasets  (7)
  12. Genetic Research  (7)
  13. Genomics  (7)
  14. Rna Sequencing  (6)
  15. Methods  (6)
  16. Bioinformatics  (6)
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