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Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis
Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis
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Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis

Ernst, Christina ; Eling, Nils ; Martinez-Jimenez, Celia P ; Marioni, John C ; Odom, Duncan T

Nature communications, 2019-03, Vol.10 (1), p.1251-1251, Article 1251 [Peer Reviewed Journal]

England: Nature Publishing Group

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2
scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells
scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells
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scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

Clark, Stephen J ; Argelaguet, Ricard ; Kapourani, Chantriolnt-Andreas ; Stubbs, Thomas M ; Lee, Heather J ; Alda-Catalinas, Celia ; Krueger, Felix ; Sanguinetti, Guido ; Kelsey, Gavin ; Marioni, John C ; Stegle, Oliver ; Reik, Wolf

Nature communications, 2018-02, Vol.9 (1), p.781-9, Article 781 [Peer Reviewed Journal]

England: Nature Publishing Group

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3
Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing
Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing
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Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing

Bach, Karsten ; Pensa, Sara ; Grzelak, Marta ; Hadfield, James ; Adams, David J ; Marioni, John C ; Khaled, Walid T

Nature communications, 2017-12, Vol.8 (1), p.2128-11, Article 2128 [Peer Reviewed Journal]

England: Nature Publishing Group

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4
Detection and removal of barcode swapping in single-cell RNA-seq data
Detection and removal of barcode swapping in single-cell RNA-seq data
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Detection and removal of barcode swapping in single-cell RNA-seq data

Griffiths, Jonathan A ; Richard, Arianne C ; Bach, Karsten ; Lun, Aaron T L ; Marioni, John C

Nature communications, 2018-07, Vol.9 (1), p.2667-6, Article 2667 [Peer Reviewed Journal]

England: Nature Publishing Group

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5
The dynamic genetic determinants of increased transcriptional divergence in spermatids
The dynamic genetic determinants of increased transcriptional divergence in spermatids
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The dynamic genetic determinants of increased transcriptional divergence in spermatids

Panten, Jasper ; Heinen, Tobias ; Ernst, Christina ; Eling, Nils ; Wagner, Rebecca E ; Satorius, Maja ; Marioni, John C ; Stegle, Oliver ; Odom, Duncan T

Nature communications, 2024-02, Vol.15 (1), p.1272-1272, Article 1272 [Peer Reviewed Journal]

England: Nature Publishing Group

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6
A high-content RNAi screen reveals multiple roles for long noncoding RNAs in cell division
A high-content RNAi screen reveals multiple roles for long noncoding RNAs in cell division
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A high-content RNAi screen reveals multiple roles for long noncoding RNAs in cell division

Stojic, Lovorka ; Lun, Aaron T L ; Mascalchi, Patrice ; Ernst, Christina ; Redmond, Aisling M ; Mangei, Jasmin ; Barr, Alexis R ; Bousgouni, Vicky ; Bakal, Chris ; Marioni, John C ; Odom, Duncan T ; Gergely, Fanni

Nature communications, 2020-04, Vol.11 (1), p.1851-1851, Article 1851 [Peer Reviewed Journal]

England: Nature Publishing Group

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7
Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression
Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression
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Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression

Kar, Gozde ; Kim, Jong Kyoung ; Kolodziejczyk, Aleksandra A ; Natarajan, Kedar Nath ; Torlai Triglia, Elena ; Mifsud, Borbala ; Elderkin, Sarah ; Marioni, John C ; Pombo, Ana ; Teichmann, Sarah A

Nature communications, 2017-06, Vol.8 (1), p.36-36, Article 36 [Peer Reviewed Journal]

England: Nature Publishing Group UK

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8
Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution
Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution
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Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution

Wong, Emily S ; Schmitt, Bianca M ; Kazachenka, Anastasiya ; Thybert, David ; Redmond, Aisling ; Connor, Frances ; Rayner, Tim F ; Feig, Christine ; Ferguson-Smith, Anne C ; Marioni, John C ; Odom, Duncan T ; Flicek, Paul

Nature communications, 2017-10, Vol.8 (1), p.1092-13, Article 1092 [Peer Reviewed Journal]

England: Nature Publishing Group

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9
Time-resolved single-cell analysis of Brca1 associated mammary tumourigenesis reveals aberrant differentiation of luminal progenitors
Time-resolved single-cell analysis of Brca1 associated mammary tumourigenesis reveals aberrant differentiation of luminal progenitors
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Time-resolved single-cell analysis of Brca1 associated mammary tumourigenesis reveals aberrant differentiation of luminal progenitors

Bach, Karsten ; Pensa, Sara ; Zarocsinceva, Marija ; Kania, Katarzyna ; Stockis, Julie ; Pinaud, Silvain ; Lazarus, Kyren A ; Shehata, Mona ; Simões, Bruno M ; Greenhalgh, Alice R ; Howell, Sacha J ; Clarke, Robert B ; Caldas, Carlos ; Halim, Timotheus Y F ; Marioni, John C ; Khaled, Walid T

Nature communications, 2021-03, Vol.12 (1), p.1502-11, Article 1502 [Peer Reviewed Journal]

England: Nature Publishing Group

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10
Time space and single-cell resolved tissue lineage trajectories and laterality of body plan at gastrulation
Time space and single-cell resolved tissue lineage trajectories and laterality of body plan at gastrulation
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Time space and single-cell resolved tissue lineage trajectories and laterality of body plan at gastrulation

Wang, Ran ; Yang, Xianfa ; Chen, Jiehui ; Zhang, Lin ; Griffiths, Jonathan A. ; Cui, Guizhong ; Chen, Yingying ; Qian, Yun ; Peng, Guangdun ; Li, Jinsong ; Wang, Liantang ; Marioni, John C. ; Tam, Patrick P. L. ; Jing, Naihe

Nature communications, 2023-09, Vol.14 (1), p.5675-5675, Article 5675 [Peer Reviewed Journal]

London: Nature Publishing Group

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