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Teaching bioinformatics through the analysis of SARS-CoV-2: project-based training for computer science studentsPoličar, Pavlin G ; Špendl, Martin ; Curk, Tomaž ; Zupan, BlažBioinformatics (Oxford, England), 2024-06, Vol.40 (Supplement_1), p.i20-i29 [Periódico revisado por pares]Texto completo disponível |
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Material Type: Artigo
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Scaling DEPP phylogenetic placement to ultra-large reference trees: a tree-aware ensemble approachJiang, Yueyu ; McDonald, Daniel ; Perry, Daniela ; Knight, Rob ; Mirarab, Siavash Schwartz, RussellBioinformatics (Oxford, England), 2024-06, Vol.40 (6) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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Material Type: Artigo
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D’or: Deep orienter of protein-protein interaction networksPirak, Daniel ; Sharan, Roded Cowen, LenoreBioinformatics (Oxford, England), 2024-06 [Periódico revisado por pares]Texto completo disponível |
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Material Type: Artigo
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Bigtools: a high-performance BigWig and BigBed library in RustHuey, Jack D ; Abdennur, Nezar Wren, JonathanBioinformatics (Oxford, England), 2024-06, Vol.40 (6) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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Material Type: Artigo
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GammaGateR: semi-automated marker gating for single-cell multiplexed imagingXiong, Jiangmei ; Kaur, Harsimran ; Heiser, Cody N ; McKinley, Eliot T ; Roland, Joseph T ; Coffey, Robert J ; Shrubsole, Martha J ; Wrobel, Julia ; Ma, Siyuan ; Lau, Ken S ; Vandekar, Simon Kelso, JanetBioinformatics (Oxford, England), 2024-06, Vol.40 (6) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Improving the performance and interpretability on medical datasets using graphical ensemble feature selectionBattistella, Enzo ; Ghiassian, Dina ; Barabási, Albert-László Lu, ZhiyongBioinformatics (Oxford, England), 2024-06, Vol.40 (6) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Interpretable deep learning in single-cell omicsWagle, Manoj M ; Long, Siqu ; Chen, Carissa ; Liu, Chunlei ; Yang, Pengyi Wren, JonathanBioinformatics (Oxford, England), 2024-06, Vol.40 (6) [Periódico revisado por pares]Texto completo disponível |
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Material Type: Artigo
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HE2Gene: image-to-RNA translation via multi-task learning for spatial transcriptomics dataChen, Xingjian ; Lin, Jiecong ; Wang, Yuchen ; Zhang, Weitong ; Xie, Weidun ; Zheng, Zetian ; Wong, Ka-Chun Kelso, JanetBioinformatics (Oxford, England), 2024-06, Vol.40 (6) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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Material Type: Artigo
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HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformerXu, Xiaopeng ; Xu, Chencheng ; He, Wenjia ; Wei, Lesong ; Li, Haoyang ; Zhou, Juexiao ; Zhang, Ruochi ; Wang, Yu ; Xiong, Yuanpeng ; Gao, Xin Martelli, Pier LuigiBioinformatics (Oxford, England), 2024-06, Vol.40 (6) [Periódico revisado por pares]Texto completo disponível |
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Material Type: Artigo
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SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive modelsGjoni, Ketrin ; Pollard, Katherine S Martelli, Pier LuigiBioinformatics (Oxford, England), 2024-06, Vol.40 (6) [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |