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LocusZoom: regional visualization of genome-wide association scan results

Pruim, Randall J. ; Welch, Ryan P. ; Sanna, Serena ; Teslovich, Tanya M. ; Chines, Peter S. ; Gliedt, Terry P. ; Boehnke, Michael ; Abecasis, Gonçalo R. ; Willer, Cristen J.

Bioinformatics, 2010-09, Vol.26 (18), p.2336-2337 [Periódico revisado por pares]

Oxford: Oxford University Press

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Título:
LocusZoom: regional visualization of genome-wide association scan results
Autor: Pruim, Randall J. ; Welch, Ryan P. ; Sanna, Serena ; Teslovich, Tanya M. ; Chines, Peter S. ; Gliedt, Terry P. ; Boehnke, Michael ; Abecasis, Gonçalo R. ; Willer, Cristen J.
Assuntos: Applications Note ; Biological and medical sciences ; Computer Graphics ; Fundamental and applied biological sciences. Psychology ; General aspects ; Genome-Wide Association Study ; Humans ; Internet ; Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) ; Software
É parte de: Bioinformatics, 2010-09, Vol.26 (18), p.2336-2337
Notas: The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.
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To whom correspondence should be addressed.
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Associate Editor: Dmitrij Frishman
Descrição: Genome-wide association studies (GWAS) have revealed hundreds of loci associated with common human genetic diseases and traits. We have developed a web-based plotting tool that provides fast visual display of GWAS results in a publication-ready format. LocusZoom visually displays regional information such as the strength and extent of the association signal relative to genomic position, local linkage disequilibrium (LD) and recombination patterns and the positions of genes in the region. Availability: LocusZoom can be accessed from a web interface at http://csg.sph.umich.edu/locuszoom. Users may generate a single plot using a web form, or many plots using batch mode. The software utilizes LD information from HapMap Phase II (CEU, YRI and JPT+CHB) or 1000 Genomes (CEU) and gene information from the UCSC browser, and will accept SNP identifiers in dbSNP or 1000 Genomes format. Single plots are generated in ∼20 s. Source code and associated databases are available for download and local installation, and full documentation is available online. Contact: cristen@umich.edu
Editor: Oxford: Oxford University Press
Idioma: Inglês

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LocusZoom: regional visualization of genome-wide association scan results

Pruim, Randall J. ; Welch, Ryan P. ; Sanna, Serena ; Teslovich, Tanya M. ; Chines, Peter S. ; Gliedt, Terry P. ; Boehnke, Michael ; Abecasis, Gonçalo R. ; Willer, Cristen J.

Oxford: Oxford University Press

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